FMO01171.5prime Sequence
1172 bp (920 high quality bases) assembled on 2008-03-04
> FMO01171.5prime
CAGTCGACATGTCGAAGTTTCTGGGCGTGCCGCTGAAGAAGCCGTCGGAG
GTGGATGTGATCAAGCCGCTGAACAATCTCATCCAGAGCACCTACAACGG
TGCGTCGGAGGAGGAGAAGGGCAAGTACGGAGAGGCCGTCAACGAATTTT
CGAAACAACGCAATACGGCAATTTGGAAATTCTTTGAAAAGTACGAGGCT
TCGCTGGAGATTGTGTACGCCTATTATGACCAGATTTGTGCGCTGGAGAC
CAAGATATCGGTTAGCGAACTTCAGATACCCTTTAAGTGGAAGGATGCCT
TCGACAAGGGCTCCATTTTCGGCGGCAAGATCAGCCTGACTCACACCTCC
TTGCTTTATGAGAAGGTCGGTGTGCTCTTCAACATTGCCGCCCTGCAGAG
CAACATCGCTGCCAACCAGTCCTTGGATTCGGATGACGGCCTTAAGCTGA
CCATCAAACTGCTCCAGCAGAGCGCCGGCATCTTTCAGTATTTGAAGGGA
GCGACGCCAGCGGCAGTGCCCTCGGAACCCACGCCCGATCTCAGCCAGGA
TACGCTAACCGTGCTGCAGGCTCTGATGGTCGCCCAAGCGCAGGAGGTTT
TCATTCTGAAGGCAATTAAGGATAACTTGAAGGACCAGATCATCGCCAAG
CTTTGCTGCCAGGCGGAGGAGTCTTACGCCGATGTGCTGCGCGCTATGCA
AAAGGAGTCTGTGCGCAGCCTGTGGGAGAAGGAGTGGATACCTACTATTG
CTGGAAAGCAGGCCGGCTTCCATGCCCTCACCCAGTTGTACCAGAGTCTG
GTGTGCCGTGCCGCCAAGAAGATTGGCGAGGAGATTGCTCGCTTGCGCAA
CGCATTGATCTTTTCAAGGCGGCTCATGACGCGTAGCGGAATGAGACCTA
CTTGGATGAATACTTCAGCGCGCAGCGCACTTGACGAGTTCCACCAGGAC
ACGAGTTCATCTACACGAGATCATACTGAGCTGACACTTGACTCTTCCTG
AAAGCCAGTGGCAGCACTGCCATGCTGTTCCTGCTGAATTAGATTATTTC
ACAGCTAATGGCTGGAGCTTCTCTGGTCTGACGCTTCGAATGGCGCATGG
AATTGTCAGTGATCTGGAGTGCGACTGAACTGAATGCTTGCACTGACTCA
GGGCCGGGAAAACGCAGGACAC
FMO01171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 132..1116 | 9..984 | 4560 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27699086..27699367 | 621..340 | 1365 | 98.9 | Minus |
| 3R | 32079331 | 3R | 27698432..27698731 | 919..621 | 1355 | 99 | Minus |
| 3R | 32079331 | 3R | 27699768..27699979 | 220..9 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 27699435..27699553 | 339..221 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:21 has no hits.
FMO01171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:21 Download gff for
FMO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-RA | 267..1263 | 9..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:25 Download gff for
FMO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1128 | 9..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:33 Download gff for
FMO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1128 | 9..995 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:33 Download gff for
FMO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27698345..27698730 | 622..995 | 95 | <- | Minus |
| 3R | 27699086..27699367 | 340..621 | 98 | <- | Minus |
| 3R | 27699435..27699553 | 221..339 | 100 | <- | Minus |
| 3R | 27699768..27699979 | 9..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:25 Download gff for
FMO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23524067..23524452 | 622..995 | 95 | <- | Minus |
| arm_3R | 23524808..23525089 | 340..621 | 98 | <- | Minus |
| arm_3R | 23525157..23525275 | 221..339 | 100 | <- | Minus |
| arm_3R | 23525490..23525701 | 9..220 | 100 | | Minus |
