FMO01172.5prime Sequence
1139 bp (980 high quality bases) assembled on 2008-03-04
> FMO01172.5prime
CAGTCGACATGGTAAAGAAGCGTCAGGCGGACAGTCGCGACCACGATTGC
TCAACGGATTCCGGCAATGAGGATCTGCATCATCGAAAAGGACTCGGCTC
GCCCGGTCAGTCGGATGGCGCCACCCCCACCACCGCCAGCTGCCAGCACA
TCAAGAAGGCGGTGGACGCGGCCCGACTAAGGCGTCTACTGAAGTCCACG
GGTCTACTCTACGAGTGCAGCCAATGTCAGAAGCTGGGCAAGACAGCGGG
CAGCGCTGCGGGAGCGGGAGCGAGTGAAGGAGCTGTCGGTCCTGGCGGAA
ATCCGGTCACCTTCGAATTTGACAACACCCTGTGGCTGTGCCTCAAGTGC
GGCAGCCAGCTGTGCGGGAGGGCACGCCACAAGCACGCCTTAGAACACTA
CCAGACACCTCATTCGGACTCACATGCCCTGGCCATGAATACGCGCTCCT
TCGACATCTGGTGCTATGAGTGCGACATGAAGATCTGCTCCAATCTGCGC
AAAAACCTGCTTGAGTGCGTGGAGCTGGTCAAGAAATTGGCCCAGAAGCC
GCCCACTAGCACGGTTACGCCCAGTACGCCAACGATTAGCTACATCGAGG
AGAAGCTTAAAGCCGCGCTGGAGCATCTCACACCAATAGTGCCAATGACT
GGCGGATCATTTGACGACTCCAGCAGTAGAGGGTCTCTGGCGGCGGCCGG
TGGCGGGGGCGGGGTCGGTTCATCTCGAAATAGGCAGGTGGCCATACCGA
TGCCACCACCAGAGCCTAGCTCCGGACTTTCGACCTCAGACTCGCTGACC
AGTGTGCCGGGTATGGCAAAGAGAATTGACCAGTACTCGGCCACCACCAA
TGGCAACACTGGGAACAAACGACTCCTGACCCTAGAGACGCCGCGCATCG
AAAATGAACGCCTGCCCGCGTGCGAGGATTGACAACTGGGCATACATGCT
TCTTTATGCGGGATGCAGTGCCTCGCCCAGAACGCCGTTCTACTAGCGTA
CTGAAGACTGTCGGAGCCCGGAAAAAATTCATCTACTGGCGATCGTTCAC
AATAAAGAACAAGTGACTTGACTGCAGGATCAAGTACTCTGTCTCTTGGG
GGACTCACGGCCGCTTACAATGCCTGAGAGGGAACGTAC
FMO01172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4165-RF | 4454 | CG4165-RF | 201..1331 | 8..1114 | 4960 | 97.2 | Plus |
| CG4165-RE | 4093 | CG4165-RE | 153..1283 | 8..1114 | 4960 | 97.2 | Plus |
| CG4165-RB | 4066 | CG4165-RB | 126..1256 | 8..1114 | 4960 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5423115..5423701 | 401..981 | 2655 | 98.8 | Plus |
| X | 23542271 | X | 5422621..5423017 | 8..404 | 1985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:51 has no hits.
FMO01172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:06 Download gff for
FMO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 99..1128 | 1..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:45 Download gff for
FMO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 120..1149 | 1..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:49 Download gff for
FMO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 120..1149 | 1..1022 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:49 Download gff for
FMO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5422615..5423017 | 1..404 | 99 | -> | Plus |
| X | 5423119..5423745 | 405..1022 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:45 Download gff for
FMO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5316648..5317050 | 1..404 | 99 | -> | Plus |
| arm_X | 5317152..5317778 | 405..1022 | 98 | == | Plus |
