FMO01173.5prime Sequence
1188 bp (981 high quality bases) assembled on 2008-03-04
> FMO01173.5prime
CAGTCGACATGTCGCACAAGACTAGCAACCGTCGCAGCAGCGACCTGGAG
TGTCCACTTGCTTCATTGGGCCGCAACAGCAATGCGGTACGCGACCACTA
CCACCACCCGCATCCGCTGAGCTCCAGTCCACTGGATCCACAGGCCTACA
AAATGATGTCCCGCAAGTCACCCAATCCCGGCCTGGAGGTGGCCGAAGCG
CTGGCCTCGCGCAGCTCCACGCCGCCCAGCGACCAGGCTGGGGCATCCTC
GACGGCGGCGGCGGCAGCAGTGCTCCATATGGTGCAGCAAAAAGCGGCGA
CCTTTGAGTTGAGAGGCCGCCACTCGCGACCAACCGAGCAGCAGACCAGC
TATGGAGCCCATTCCACGGCTTCGGTGGGTAGGCATGCGAAGAAGTCCCC
AGAACTACCAGCTCCAGCGTCGAGGAACGTGGCTCCCGTACCACAGCCGC
GGAACTTCCTAACACTAGAACATGTCCTGCAATTTGGAACCCAGCGACCC
AGTTGGATGCACGGCAACAGTGCGGACACGGAGGATTCGAGTGACAACAA
CGCGGGTGGCGGTGGAGCTGGAAGTGGCAGTGGTGGAGCTGGAGGACGGA
GACGTGCCCAAGGTGGCCGCTGCAGTGTGCCCACTGTACTCAGCAGCAAT
GGCAGCGGCGGCAATGGAGCCCAGTACCTGCTGGACAAGAAAATGGAGTC
ACTGTATCTGGGTAACGCCCTGAGAACCCTTCCCTTAGGCGCCGAAGCGA
GTCAGTTCCAAAACGAACGCTACTACCTGGAGGATTACAGCAGCGGCAGC
TGATGCGAGCGACTGCCAGAACGCCTGCATCATCCGCGCACCTCCAGTCC
CAGCGAAACAAGTGGATCGGATCGCTACCTCCTAACCCGCAGCTCCAACT
CCAACCACCTGCACTCCAAGGCCAGAGCCTCCTCGGACGGGCTGTGCAAC
CTGGGACGCTTCTCGCCCAGCTGATCAAGGCTACGCCACACTGGTCTCAC
CCTCTCCCACGGTCCACATTCAAGGTGGGCGGACGGGCATGGACCATTCT
ACCACAGCCCAGTGGAGCGGATCAGCAAGCCGTTCGCCCACTACACGGCC
CGAAGGACCTCTACAATTGGATTGGAGAGGGACCGTTCGCATTGACCTCG
CCTTGAACGAGTTCCCTCCGTCGGATCGCCTCTTGTTG
FMO01173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 3176 | CG4221-RA | 473..1602 | 8..1125 | 4985 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15929975..15930786 | 8..819 | 4000 | 99.5 | Plus |
| 3R | 32079331 | 3R | 15930840..15931038 | 816..1012 | 820 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:12 has no hits.
FMO01173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:17 Download gff for
FMO01173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 454..1538 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:42 Download gff for
FMO01173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 469..1553 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:18 Download gff for
FMO01173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 469..1553 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:18 Download gff for
FMO01173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15929971..15930786 | 1..819 | 99 | -> | Plus |
| 3R | 15930844..15931112 | 820..1080 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:42 Download gff for
FMO01173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11755693..11756508 | 1..819 | 99 | -> | Plus |
| arm_3R | 11756566..11756834 | 820..1080 | 93 | | Plus |
