FMO01174.5prime Sequence
1027 bp (270 high quality bases) assembled on 2008-03-04
> FMO01174.5prime
CAGTCCACATGACTGTGATAATGGTGGACGGGTTCCCCCTGTGGCTGCTC
TACAAGCTGTTCCTGTCTCCCTGCTGCCTTCTCCTGGGGCACGTGCTTAA
ACTGTCTACCGTCCTCTTTACCTTTGCAGACAATAACGGCGCCCGCAAGC
AAGCGGAGCACCCGAACAATCAGTCCCACCACATCAACCACCACAATCAT
CAGCATCCGACAAGCAATCCCAATGAGCTGCCCAAGCCGAAGAGGGTCCT
CTATCCGCGGGAGAACATACGCATTGGCTGGAAGCATTCGGAGCGCAAAT
GGCAAGTGGGCACGGGCATGATCAATGTGGGCAACACCTGCTACCTCAAC
TCAACGCTTCAGGCGCTCCTGCACATACCCGCCCTGGCCAATTGGCTCAT
TTCGGAGCAGGCGCATCTGGCTGACTGCAATGTGGCCGAACCTGGCAGCG
GTTGCATCATTTGCGCCATGACCAAAACACTTTTGGCCACCCAAAGCTAT
CAGTCGGCCGTCATACCCTTCCTCATCTACTCGAAGCTAAAGCAGATCTG
CAAACACATGTGTCGTTGGTCGCCAAGAGGATGCGCACGAGTTCCTGCGC
TTCCTGATCGAGGCCATGAATCGGGCGTAATTGATGCGGATTCCTAACTA
CAAAAAAGCTGGATCAATTGGTAAGGAGACCACGCCGCTGGGACAGATCT
TTGGTGGCTATCTGCGCAGCGAGGTGCGCTGTCTGAGCTGCACCATGTGT
CCATTACGTTTCATCACTTCCAGGATCTGTTGCTCAACATCCGCAAGGCA
GACTCCGTGAAGGAGGCTTTCTAGGGACCCTTTTCTCGCGAACGGTAGAG
GAATGGGCTACAAGTGCGAGGGATGCAAGAAGATAGTATCTGCCCAAGTG
ATTCTCTTTGGAACGTGCCCCATTACGCTTTTGTATTATGCTGAAGCGAT
CATCATGATCGGCACATGTGACCAGCAAATTCCTCAGGTCATGCAAAGAT
TTGGACAAACTCGCGGCCGTTTCCAAC
FMO01174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scny-RJ | 4538 | CG5505-RJ | 333..1337 | 9..1003 | 4025 | 94.3 | Plus |
| scny-RB | 3512 | CG5505-RB | 333..1337 | 9..1003 | 4025 | 94.3 | Plus |
| scny-RI | 3644 | CG5505-RI | 150..1036 | 127..1003 | 3465 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5771497..5772373 | 9..883 | 3735 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:20 has no hits.
FMO01174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:31 Download gff for
FMO01174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5505-RE | 333..1264 | 9..936 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:31 Download gff for
FMO01174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RB | 333..1264 | 9..936 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:59 Download gff for
FMO01174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RB | 333..1264 | 9..936 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:59 Download gff for
FMO01174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5771497..5772379 | 9..885 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:31 Download gff for
FMO01174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5764597..5765479 | 9..885 | 96 | -> | Plus |
