Clone FMO01175 Report

Search the DGRC for FMO01175

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:75
Vector:pMK33-CFH-BD
Associated Gene/Transcriptbib-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01175.5prime Sequence

1210 bp (993 high quality bases) assembled on 2008-03-04

> FMO01175.5prime
CAGTCGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGGAGCACAAC
ATAGACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCGATGCGTAA
GGACTCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTCCAGCACCC
TGCAGGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGCTGGAGTTT
TGGAGATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTACGTGTTCAT
CGTCTGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGTGTCGTCCG
TGCTTTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTACACTGACG
CAGTGCTTCTTCCACATCTCGGGCGCCCACATCAATCCCGCCGTAACCCT
GGCTCTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGCCATGTACA
TAACCGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGCTTTATGGC
GTAACTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATCTCACATAG
CGCTGCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCATCCTCACCT
TTCTGGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGAAGAAGTTC
ATGGGCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCCTGCTGCTT
TGTGTCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCCTTCGTTTG
TGCTTAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGACCACTGGTG
GGCGGCATGGCCTCTGGCCTGGTGTACGAGTACATCTTCAACTCGCGCAA
CCGCAACCTGCGCACACAAGGGCAGCATCGACACGATTCCAGTTCGATTC
ACTCGGAGGACGACTGAACTACGACATGGATATGGAGAGCCCAACAGTAT
CAGCAGTCGCAGGCACCTACCGCCGTGTCAGTCCAATGCAATGGCGGAAG
ACAGGCGCCGGAAATGGTCAACACCAAGCTGCCAACATGGGCAGATGCCG
GGCGTATGGCCAATGGCCGTCAGGGCATTATGCCAGATCTGTACTGTTCG
CGTTCTTGAATACATCGACAGAACCTGTACGGGACCGCTCTGTATGCGTT
GCACTTGACAAGACTGAATCCTGAATTGGTAGCCAAAGACAACGGCCCTA
TTCAGAAAGT

FMO01175.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
bib-RB 3276 CG4722-RB 302..1406 5..1094 5030 97.9 Plus
bib-RA 3276 CG4722-RA 302..1406 5..1094 5030 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9993266..9993648 707..1077 1215 94.5 Plus
2L 23513712 2L 9992254..9992462 499..707 1045 100 Plus
2L 23513712 2L 9984946..9985146 5..205 1005 100 Plus
2L 23513712 2L 9986787..9986956 204..373 835 99.4 Plus
2L 23513712 2L 9987600..9987727 372..499 640 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:15:52 has no hits.

FMO01175.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:32 Download gff for FMO01175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4722-RA 295..1404 1..1094 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:39 Download gff for FMO01175.5prime
Subject Subject Range Query Range Percent Splice Strand
bib-RA 297..1406 1..1094 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:34 Download gff for FMO01175.5prime
Subject Subject Range Query Range Percent Splice Strand
bib-RA 297..1406 1..1094 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:34 Download gff for FMO01175.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9992255..9992462 500..707 100 -> Plus
2L 9984941..9985146 1..205 99 -> Plus
2L 9986789..9986955 206..372 99 -> Plus
2L 9987601..9987727 373..499 100 -> Plus
2L 9993267..9993668 708..1094 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:39 Download gff for FMO01175.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9984941..9985146 1..205 99 -> Plus
arm_2L 9986789..9986955 206..372 99 -> Plus
arm_2L 9987601..9987727 373..499 100 -> Plus
arm_2L 9992255..9992462 500..707 100 -> Plus
arm_2L 9993267..9993668 708..1094 94   Plus