FMO01176.5prime Sequence
1183 bp (996 high quality bases) assembled on 2008-03-04
> FMO01176.5prime
CAGTCGACATGGACGAGCACACGTTAAACGACCTGTTGGAGTGCTCCGTG
TGTCTTGAGCGACTGGACACCACATCGAAGGTGCTGCCATGCCAGCACAC
CTTCTGCCGCAAATGCTTGCAGGACATTGTGGCCAGTCAGCACAAGTTGC
GATGCCCGGAGTGCCGCATCCTGGTCTCTTGCAAAATTGATGAGCTGCCT
CCAAACGTCTTGCTGATGCGAATCTTAGAAGGCATGAAACAAAATGCAGC
AGCTGGCAAAGGAGAAGAAAAGGGAGAGGAGACTGAAACACAGCCGGAAA
GGGCCAAACCTCAGCCGCCAGCGGAATCAGTGGCCCCGCCTGACAACCAA
CTACTCCAGCTGCAGTCACATCAGCAATCTCATCAGCCGGCTCGTCACAA
GCAACGTCGATTTCTACTCCCCCACGCCTATGCCCTCTTTGACTTCGCCT
CCGGTGAAGCCACCGATCTAAAGTTCAAGAAAGGGGATCTGATACTGATC
AAGCATCGCATCGACAACAACTGGTTTGTGGGTCAAGCGAATGGTCAGGA
GGGCACATTTCCCATCAACTACGTCAAGGTATCGGTTCCGCTGCCCATGC
CGCAGTGCATTGCCATGTATGACTTTAAGATGGGGCCCAACGACGAGGAG
GGATGCCTCGAATTTAAGAAAAGCACTGTAATACAGGTAATGCGCCGAGT
TGATCATAATTGGGCAGAAGGACGAATTGGCCAGACCATCGGAATCTTTC
CAATAGCATTCGTTGAGCTGAATGCAGCGGCCAAAAAGCTGTTGGACAGC
GGGCTACACACCCATCCATTCTGCCATCCACCGAAGCAACAGGGGCAGCG
GGCCCTTCCTCCGGTTCCAGTTATTGATCCCACGGTGGTCACGGAATCCA
GTTCGGGATCCTCCAATTCCACGCCGGGCAGCAGCATTCAGCTCCACATC
CAGCTCGATACTGCAGTCGATCACAAATCTCACTGCGAATACCTCCACAT
GTAGTAGCTCGGATCGCGTCTGTTCGTTCGTGACAAGGAGCAAAGAAAAC
GCCACTCTAATGCTTGCTGGAGAGACTCCATTAGTTGCTGCAACCACGCC
ATCGCTGAATTCTTAACTGCGATGAACTAGCGCTTGGAAGTTCCAGCTCC
ACAGCCTAAATCCAGGTGAGTCCCCCAAGAACG
FMO01176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-RA | 3169 | CG4909-RA | 333..1525 | 9..1160 | 4940 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17569520..17570250 | 230..958 | 3560 | 99.5 | Plus |
| 2R | 25286936 | 2R | 17569064..17569178 | 9..123 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 17569243..17569355 | 120..232 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:49 has no hits.
FMO01176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:34 Download gff for
FMO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4909-RA | 319..1393 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:14 Download gff for
FMO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 325..1399 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:00 Download gff for
FMO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 325..1399 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:00 Download gff for
FMO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17569056..17569177 | 1..122 | 96 | -> | Plus |
| 2R | 17569246..17569354 | 123..231 | 100 | -> | Plus |
| 2R | 17569522..17570365 | 232..1057 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:14 Download gff for
FMO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13456561..13456682 | 1..122 | 96 | -> | Plus |
| arm_2R | 13456751..13456859 | 123..231 | 100 | -> | Plus |
| arm_2R | 13457027..13457870 | 232..1057 | 97 | | Plus |
