FMO01177.5prime Sequence
1249 bp (1002 high quality bases) assembled on 2008-03-04
> FMO01177.5prime
CAGTCGACATGGACTCGCTCAAGTTACCAAAGGCCAACAGTGCCACCAGC
AGTGCCAGCGGCAGCAACAGCAACCTGTCCGGTTCGACTTCCGCGTCCGC
ATCCGCAGCCACATCGCCTACATCGTCAGGAACTGCAGTGGGTGGCATTC
TATCCGGTGCCCCAAAATCGCCACCTGGCCTGGGCAGCAGCACCCCGATC
TCGGTGCGATTCAATGCCAACGAGGAGTCCCTGGACGACATCCTACAGTC
CTTCCATCACAGCAAGCATAGTCCCAGTGGAGGAGCGAGTGGCGGCGGAG
ATGCCTCGCCCACATCGAATCTGCTCGGGATGAAGAACAACGGGCTGGGA
TTGGTCGTGGGCAACTGTGACTCCCTCTCCAGCAGTCCATCGCACCCCCA
GATGCATGCCGGATCCGCATCCCTCTTCGGCAACGACGAAGTTAGTCTGC
GCAATAATTTCATGCAAGCCGGTGGTTTCTTCAATCGAAAAAGTTGCGGT
GGCCTGCCGAATCTCAATCTCAACAAGCCGCCCCAGCTCCACCAGCAACA
GCATCAACAACAGCATCAGCAGCACCAGCAACATCAACAGCAGCAACAGC
TCCATCAGCACCAACAGCAACTGTCGCCGAATCTGAGTGCCCTGCACCAT
CATCACCAGCAGCAGCAGCAGCTTCGGGAAAGCGGAGGATCACATAGCCC
CTCGTCGCCGGGTGGAGGAGGCGGAGGATCGCCGTACAACGGCTCTCAGG
CGGGCTGCAGCAGCGGCGGCATCTCGCCCATTCCTCCCCAGATGGGCGTG
TCGCCCAAATACCGTCGCAGCATATCCTTTCCCATCAAGGGCAACTCGCC
CACAGCTATCTATGGCAATATGCACATGGACGGCATGGGTAGTGGGCACA
TGAATATACCGACACTTTCGATTGGAAACGGGGGGTGGTGGCGATCTACT
GGCATGGTCTCAGCCGGAGCAACTGTTGGCGGAAATGCGCCCTATTTGGG
CAACAGCTATGGCAACATGATGACGTTCAATGGACAAATGCCACCACGGT
GGCGGCTTGAATAACTCACTGTGGCGATATATGCGCCAACTGGTCGCTGG
GTGAAATGGGTGGGCGATGCAGCAACAGCATGTCTTATGCAGACGATGCC
GGTGATGGGCGATCCAGCACTGAGCAGGCATGCTATGCTAAGACCATGGA
ATGATACATCGCCTCTATGCCTCTAACGTGGGTGCACTACTCGAGTGCT
FMO01177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 3116 | CG43782-RB | 421..1612 | 8..1187 | 5325 | 97.2 | Plus |
| orb2-RH | 8400 | CG43782-RH | 494..1685 | 8..1187 | 5325 | 97.2 | Plus |
| orb2-RC | 4187 | CG43782-RC | 494..1685 | 8..1187 | 5325 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8943877..8944522 | 1136..492 | 2725 | 96.1 | Minus |
| 3L | 28110227 | 3L | 8948883..8949281 | 431..33 | 1980 | 99.7 | Minus |
| 3L | 28110227 | 3L | 8947828..8947889 | 493..432 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6882 | 534..692 | 343 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2517 | 521..675 | 330 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2469 | 521..672 | 327 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 521..672 | 316 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 545..672 | 257 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 571..672 | 212 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2979 | 528..672 | 211 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 565..669 | 192 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 558..677 | 191 | 64.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 573..672 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6814 | 35..138 | 155 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 602..672 | 139 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6891 | 44..137 | 139 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6838 | 35..138 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6856 | 35..138 | 128 | 59.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3141..3309 | 498..672 | 122 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2456 | 35..138 | 119 | 58.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 635..728 | 678..582 | 117 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2430 | 44..133 | 112 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 615..672 | 111 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2364 | 642..672 | 110 | 83.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1142 | 35..74 | 110 | 75 | Plus |
FMO01177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:19 Download gff for
FMO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5735-RC | 486..1640 | 1..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:55 Download gff for
FMO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 487..1641 | 1..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:26 Download gff for
FMO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 487..1641 | 1..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:26 Download gff for
FMO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8943859..8944520 | 494..1149 | 96 | <- | Minus |
| 3L | 8947828..8947889 | 432..493 | 100 | <- | Minus |
| 3L | 8948883..8949280 | 34..431 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:55 Download gff for
FMO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8936959..8937620 | 494..1149 | 96 | <- | Minus |
| arm_3L | 8940928..8940989 | 432..493 | 100 | <- | Minus |
| arm_3L | 8941983..8942380 | 34..431 | 99 | <- | Minus |
