FMO01178.5prime Sequence
1245 bp (1004 high quality bases) assembled on 2008-03-04
> FMO01178.5prime
CAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAAATATCGAA
AGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGATGCCCATTT
GGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCAGAACTCTG
CATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGCAGCAACAG
CAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGTGCGGGAAA
TAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATTGGCGGCGG
CAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCAACTCGGCA
GTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAACCGAATTC
CGGCAACGCGTCACCGGCCAGCAACTGTGACGGCGATCGGGACGAGAAGG
TGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAGTATCCCGA
TCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTGGAATCCTG
CGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTTCTGCACGT
CCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTGACAAGGGC
TATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGA
TTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCA
TCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGATCTACTGT
GACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCGCCGCTGCT
AAAGGTACCGCGTGGCAAGTGTACTGCCACGGTTGCATCTCCCGGGCGCC
TCCGCCGAAGAAAAGAGTGCAGTGGAACATCCGGCAGCAGCAGCAAATCT
AGGAGGACAAGGAAAGGGAGTCGGGCGGATCGGCCAGCGGCGTACGACAA
CAGCAAGACACCAGCCATGAGCACATGCAGCAGCAGCAAATGCTACCTGG
CAGGCGGGGATTCCCACCATCATCATCATCAGCAGCCGCGTCGCTGACTC
CCTCGCACGATGGAGTTCAATGAATTCTCTGCCGGGCCGCTCCTCTGATC
CGGCGCACTCGGTGTCGGCCCGAACTAAATAACGGACCATGCCACACTCG
GTCAGTGACAAGTGCTTCCACGGCGCATACATATTCCCCCGCTCT
FMO01178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RA | 10470 | CG10897-RA | 7471..8719 | 8..1241 | 5370 | 96.5 | Plus |
| tou-RG | 10721 | CG10897-RG | 7326..7899 | 8..581 | 2855 | 99.8 | Plus |
| tou-RF | 11743 | CG10897-RF | 6953..7526 | 8..581 | 2855 | 99.8 | Plus |
| tou-RG | 10721 | CG10897-RG | 8295..8970 | 581..1241 | 2520 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11583015..11583588 | 581..8 | 2855 | 99.8 | Minus |
| 2R | 25286936 | 2R | 11580962..11581399 | 1135..703 | 1540 | 95.2 | Minus |
| 2R | 25286936 | 2R | 11581626..11581750 | 705..581 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:54 has no hits.
FMO01178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:21 Download gff for
FMO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10897-RC | 64..1248 | 1..1177 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:08 Download gff for
FMO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7465..8649 | 1..1177 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:20 Download gff for
FMO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7465..8649 | 1..1177 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:20 Download gff for
FMO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11580847..11580862 | 1149..1164 | 100 | <- | Minus |
| 2R | 11580949..11581398 | 704..1148 | 95 | <- | Minus |
| 2R | 11581628..11581749 | 582..703 | 100 | <- | Minus |
| 2R | 11583015..11583594 | 1..581 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:08 Download gff for
FMO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7468352..7468367 | 1149..1164 | 100 | <- | Minus |
| arm_2R | 7468454..7468903 | 704..1148 | 95 | <- | Minus |
| arm_2R | 7469133..7469254 | 582..703 | 100 | <- | Minus |
| arm_2R | 7470520..7471099 | 1..581 | 99 | | Minus |
