FMO01179.5prime Sequence
1230 bp (1011 high quality bases) assembled on 2008-03-04
> FMO01179.5prime
CAGTCGACATGTTCATCGAAGACGATGCGCAAATGGACAGCTTCTGGGTG
CAGAGCGCTATTGGCGCGATCAAGGCGATCGCCTTTGTCTACGACATCAT
CACCCTTCCGGTTTACTTGGTGCTGCAGAAGCCCTGGAAACGCCGTCAGG
ACTCGCGTCGCGTGAAGGCAAAGATCGTGCGGAATGATGACAATGAGCTG
ACCTACCGGACCACGGATCCACCACGGGATGTCCACGTGAAGATGCTGCA
AGAGAATATCGATACCCTGGAGAAGGTATTCAACTATGTGGCCAAAACTT
ACACGTCGAAGCGTTGTCTGGGCACCCGGCAGATCCTCAGCGAGGAGGAT
GAGGTGCAGCAGAACGGTCGAGTCTTCAAGAAGTACAACCTCGGTGACTA
CAAGTGGAAGACGTTCACCGAGGCGGAGCGCACGGCGGCTAATTTCGGGC
GCGGTCTGCGAGAACTTGGCCAGAAACCACGCGAGAACATTGTCATCTTT
GCCGAAACGCGAGCCGAATGGATGATAGCTGCCCACGGATGCTTCAAGCA
GGCTATGCCCATTGTCACTGTCTATGCTACGCTGGGCGATGATGGAGTTG
CTCATTGCATCACCGAAACGGAAGTCACCACGGTTATCACCTCCCATGAT
CTGCTGCCCAAGTTTAAGACGCTGCTCGACAAATGCCCATTGGTGAAGAC
TATTATCTATATTGAGGATCAGCTGCAAAAGACAGAAACCACTGGCTTCA
AGGAGGGCGTCAAGATCTTGCCGTTTAACCAAGTTGTCAAGACAGGACAG
GACAGTAAATTTGAGCACGTTCCACCCAAGGAGATGACATTGCCATTATC
ATGTACACTTCCGGATCCACTGGCACACCTAAGGTGTCCTCCTCTCGCAC
AGAACTGCATTGCGACAATGAAAGGATTTGTTGATATGGTGCCTATCTAT
CCGGATGATGTACTGATCGGATTCCTGCCCTGGCTCACGTTTTGAATTGG
TGGCGGAAAGTGGGGGGTCCTATGACTGGGCGTTCCAATTGGCTACTCGA
CCTCCTTGACTCCTGATCGACACCTAGCAGCCAGAATCAAACGCCGGGGG
CAAGGCGATGCCACCGTCCTGAAGCTCACCTCTGATGACTCGGGTGCGCC
CTGATATGGATCGCCATTCCCAGGATTACCGACACAAGTAACTTGGGTCC
GGTTCGAATTACTCTCTCAATCCCTTACCC
FMO01179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acsl-RB | 3677 | CG8732-RB | 344..1520 | 9..1184 | 5210 | 96.9 | Plus |
| Acsl-RH | 3887 | CG8732-RH | 554..1730 | 9..1184 | 5210 | 96.9 | Plus |
| Acsl-RA | 3704 | CG8732-RA | 371..1547 | 9..1184 | 5210 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8678428..8678869 | 166..607 | 2195 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8678928..8679134 | 607..813 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 8680011..8680329 | 813..1131 | 910 | 92.6 | Plus |
| 2R | 25286936 | 2R | 8676472..8676608 | 32..168 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:57 has no hits.
FMO01179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:23 Download gff for
FMO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8732-RB | 335..1476 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:17 Download gff for
FMO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 364..1505 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:05 Download gff for
FMO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 364..1505 | 1..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:05 Download gff for
FMO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8676472..8676607 | 32..167 | 100 | -> | Plus |
| 2R | 8678430..8678868 | 168..606 | 99 | -> | Plus |
| 2R | 8678928..8679134 | 607..813 | 100 | -> | Plus |
| 2R | 8680012..8680329 | 814..1128 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:17 Download gff for
FMO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4563977..4564112 | 32..167 | 100 | -> | Plus |
| arm_2R | 4565935..4566373 | 168..606 | 99 | -> | Plus |
| arm_2R | 4566433..4566639 | 607..813 | 100 | -> | Plus |
| arm_2R | 4567517..4567834 | 814..1128 | 92 | -> | Plus |
