FMO01180.5prime Sequence
902 bp (892 high quality bases) assembled on 2008-03-04
> FMO01180.5prime
ATTATACGAAGTTATCAGTCGACATGTCCGCGGAACGAGAGATTCCCGCC
GAGGACAGCATCAAAGTGGTCTGCCGATTCCGACCGCTGAACGACAGCGA
AGAGAAGGCCGGCTCCAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGG
AGAACTGCATATCCATAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTC
AAACCGAATGCATCCCAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCAT
TGTTACGGATGTCCTGGCCGGGTACAATGGAACGATATTCGCATATGGTC
AGACGTCCTCCGGAAAAACGCATACGATGGAGGGCGTGATCGGGGACTCC
GTAAAACAGGGTATCATACCACGTATCGTCAACGACATTTTCAATCACAT
CTACGCCCCCCCCCCCGAACCTGGAGTTTCACATCAAGGTCTCGGGGGGG
GGAGATCTACATGGACAAGATTCGAGATCTGTTGGACGTCTCCAAGGTGA
ACTTAAGCGTGCACGAGGACAAGAACCGGGTGCCGTACGTCAAGGGCGCT
ACGGAACGGTTCGTCTCGTCGCCGGAGGATGTTTTCGAGGTGATCGAGGA
GGGCAAATCCAATCGTCACATCGCTGTGACAAACATGAACGAGCATTCTT
CGCGATCCCACTCAGTATTCCTTATCAATGTGAAGCAGGAGAACCTGGAG
AACCAGAAGAAACTATCCGGCAAACTCTACCTGGTGGATTTGGCCGGTTC
CGAGAAGGTTTCCAAGACTGGAGCGGAGGGAACCGTTCTTGATGAAGCCA
AGAACATCAACAAGTCGCTGTCGGCCTTGGGCAACGTTATTTCTGCCCTG
ACGGACGGAAACAAAACGACATCCCCTACCGTGATTCCAGCTAACGCGCA
TC
FMO01180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-RA | 3718 | CG7765-RA | 487..1365 | 24..902 | 4005 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16269794..16270254 | 632..170 | 1975 | 96.1 | Minus |
| 2R | 25286936 | 2R | 16269384..16269655 | 902..633 | 1200 | 97.8 | Minus |
| 2R | 25286936 | 2R | 16271338..16271485 | 171..24 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:00 has no hits.
FMO01180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:24 Download gff for
FMO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7765-RA | 490..1372 | 17..902 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:00 Download gff for
FMO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 483..1365 | 17..902 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:31 Download gff for
FMO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 483..1365 | 17..902 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:31 Download gff for
FMO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16269384..16269655 | 633..902 | 97 | <- | Minus |
| 2R | 16269794..16270253 | 171..632 | 96 | <- | Minus |
| 2R | 16271339..16271489 | 17..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:00 Download gff for
FMO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12156889..12157160 | 633..902 | 97 | <- | Minus |
| arm_2R | 12157299..12157758 | 171..632 | 96 | <- | Minus |
| arm_2R | 12158844..12158994 | 17..170 | 98 | | Minus |
