FMO01182.5prime Sequence
1174 bp (941 high quality bases) assembled on 2008-03-04
> FMO01182.5prime
CAGTCGACATGTCGAGCGGTCAGCAATTGATGGCCGATTCGCCAGCCTGC
AGCTCAAGTGACCATTCGCCGCTGGCCAAAAAAAGGCGTTTAGAGTTGTT
GGGTGACGGAGTGGGGGCAATGGGAATGGAAGAGGAAGAAGCCGGCGGAG
CAACGAGCAGCAGTAGCAGCAACAACTACGAAAATCACGACAAAGCAGGC
GGCGTTGACATTTCGGGCAAGTGCCAGAGCAAGACGACTAGCGAGCACCA
GCTGGAATTGTGCGTATCGTCGTCTACCTCTGACACATGCGGCGTTAATG
CTGCGGCGAAGCGAGCCGAAAAGCAGAAACTGAAACAGAGCCAAGGAAGC
GGCGACGACGTTAGTACCTCGTCAGCAGTGGAAAAGGAAGGAAGCAAGCG
GCCGGAGAAGCGCAATTACCTGAACACCACCACAATAGAATCGCAAGAAG
CCTCCTCCAGTGCATCCGCCACTAGCAACAGCAACAACAACGTCAGCTCC
AGCAACAATAACAGTAATAACAGCACTAATAACCGACAACTGGAAGGAAG
CAGCAACATGGCTGGAAACAGTGCCGCCGCCGGCGGAGATATCGATGAAT
CGCTGTACTCGCGCCAATTGTACGTCCTGGGTCACGATGCGATGCGTCGG
ATGGCCAATTCGGATATCCTTCTGTCGGGACTTGGAGGACTCGGCCTTAG
ATAGCCAAGAATGTGATTCTGGGCGGCGTGAAATCGATCACCTTGCATGA
CACAGCAACTTGTGGGCTCCATGACTTGTCGTCGCAATTCTATCTCACGG
AAGCCGATATCGGCAAGAATCGTGCGGAGGGCTCTTGCGCCAGTTGGCCG
AGTTAAACAACTATGTGCGCACCGTTTCGCACACGGGCCGCTTACGAGGA
GTTCCTGCGCAGTTTCGCGTTGTGTACTGACACTCGACGGGAGGAGCAGC
AGAGGATCGTCAAGTTTGCTCATGAAAATGGCCATGCTCTGATTCATCGC
GAGACGCGCGGACTGTTCGCAAGTTTCTGTGACTTTGCGAGAGCTTTACC
ATTACGAATACGATGTCAAGTCGATCTCTCAACTGAAGCTAGAATCCGCC
GAGCCAGGAGTCTTCTGCCTGCGAATGCCCATGTTAAGTACGGGACTTAG
CACTTGCTTGGAGAGGTGACGGGA
FMO01182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-RC | 4343 | CG1782-RC | 289..1347 | 9..1053 | 4820 | 97.9 | Plus |
| Uba1-RA | 4343 | CG1782-RA | 289..1347 | 9..1053 | 4820 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9692282..9693040 | 766..9 | 3730 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9691404..9691704 | 1053..766 | 750 | 91 | Minus |
Blast to na_te.dros performed 2014-11-28 20:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..3036 | 147..560 | 214 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6843 | 470..558 | 212 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2470 | 423..558 | 202 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6874 | 423..571 | 199 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6822 | 470..558 | 194 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2410 | 470..558 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6807 | 473..558 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 373..558 | 182 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1149 | 435..558 | 179 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6897 | 423..558 | 167 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6922 | 312..514 | 164 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 319..558 | 163 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1166 | 462..529 | 159 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2495 | 423..559 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1582 | 479..544 | 147 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1606 | 476..541 | 137 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2647 | 474..525 | 134 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1504..1605 | 424..522 | 124 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1474..1573 | 456..558 | 119 | 63.8 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 531..648 | 470..584 | 115 | 56.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7951..8026 | 463..538 | 110 | 60.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9395..9470 | 463..538 | 110 | 60.5 | Plus |
| Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 1894..1933 | 945..984 | 110 | 75 | Plus |
FMO01182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:12 Download gff for
FMO01182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1782-RA | 285..1363 | 2..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:16 Download gff for
FMO01182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1363 | 2..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:02 Download gff for
FMO01182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1363 | 2..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:02 Download gff for
FMO01182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9691388..9691703 | 767..1068 | 92 | <- | Minus |
| 2R | 9692282..9693044 | 2..766 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:16 Download gff for
FMO01182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5578893..5579208 | 767..1068 | 92 | <- | Minus |
| arm_2R | 5579787..5580549 | 2..766 | 99 | | Minus |
