FMO01183.5prime Sequence
1222 bp (986 high quality bases) assembled on 2008-03-04
> FMO01183.5prime
CAGTCGACATGGCGCCGAAATCCAGAAAGAAGAAGGCTCATGCCCGCTCC
CTAACCTGCTACTGCGATGGCAGTTGTCCGGACAATGTAAGCAATGGAAC
CTGCGAGACCAGACCCGGTGGCAGTTGCTTCAGCGCAGTCCAACAGCTTT
ACGATGAGACGACCGGGATGTACGAGGAGGAGCGTACATATGGATGCATG
CCTCCCGAAGACAACGGTGGTTTTCTCATGTGCAAGGTAGCCGCTGTACC
CCACCTGCATGGCAAGAACATTGTCTGCTGCGACAAGGAGGACTTCTGCA
ACCGTGACCTGTACCCCACCTACACACCCAAGCTGACCACACCAGCGCCG
GATTTGCCCGTGAGCAGCGAGTCCCTACACACGCTGGCCGTCTTTGGCTC
CATCATCATCTCCCTGTCCGTGTTTATGCTGATCGTGGCTAGCTTATGTT
TCACCTACAAGCGACGCGAGAAGCTGCGCAAGCAGCCACGTCTCATCAAC
TCAATGTGCAACTCACAGCTGTCGCCTTTGTCACAACTGGTGGAACAGAG
TTCGGGCTCCGGATCGGGATTACCATTGCTGGTGCAAAGAACCATTGCCA
AGCAGATTCAGATGGTGCGACTGGTGGGCAAAGGACGATATGGCGAGGTC
TGGCTGGCCAAATGGCGCGATGAGCGGGTGGCCGTCAAGACCTTCTTTAC
GACCGAAGAGGCTTCTTGGTTCCGCGAGACTGAAATCTATCAGACAGTGC
TGATGCGACACGACAATATCTTGGGCTTCATTGCCGCCGATATCAAGGGT
AATGGTAGCTGGACACAGATGTTGCTGATCACCGACTACCACGAGATGGG
CAGCCTACACGATTACCTCTCAATGTCGGTGATCAATCCGCAGAAGCTGC
AATTGCTGGCGTTTTCGCTGGCTTCTGGATTGCCACCTGCACGACGAGAT
TTTCGGAACCCTGGCAAACAGCTATCGCTCATCGCGATATCAGAGCAAGA
CATTTGGTCAGCGGAATGGGCAGTGCCCTTATTGCTGACTCGGCTGGCAA
TGAAGTACAACTCGGAACTGGATGTTCATTCCCATTGTCAGGAATCCAAC
TGTGTCGCACTTCAAGGCCTACTGTTTGAAGAATGGGTCAGCACCTTGAA
TCAAGCAGTTGAAGTTCAACGCGTATATGCAATACTGGTCTGCTCTGAGG
ACGAAAGTATACCCGGTGAATC
FMO01183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tkv-RD | 3616 | CG14026-RD | 991..2080 | 6..1087 | 5095 | 98.4 | Plus |
| tkv-RA | 2846 | CG14026-RA | 255..1310 | 40..1087 | 4925 | 98.4 | Plus |
| tkv-RB | 3129 | CG14026-RB | 538..1593 | 40..1087 | 4925 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5220547..5221401 | 1075..230 | 3730 | 97.9 | Minus |
| 2L | 23513712 | 2L | 5221463..5221651 | 230..42 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 8959513..8959637 | 678..802 | 190 | 76.8 | Plus |
| 2L | 23513712 | 2L | 5236336..5236372 | 42..6 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:47 has no hits.
FMO01183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:19 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:36 Download gff for
FMO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 986..2091 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:08 Download gff for
FMO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 986..2091 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:08 Download gff for
FMO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5220525..5221400 | 231..1098 | 97 | <- | Minus |
| 2L | 5221463..5221650 | 43..230 | 100 | <- | Minus |
| 2L | 5236336..5236377 | 1..42 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:36 Download gff for
FMO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5220525..5221400 | 231..1098 | 97 | <- | Minus |
| arm_2L | 5221463..5221650 | 43..230 | 100 | <- | Minus |
| arm_2L | 5236336..5236377 | 1..42 | 95 | | Minus |
