FMO01186.5prime Sequence
942 bp (942 high quality bases) assembled on 2008-03-04
> FMO01186.5prime
ATAAAACGAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACG
ACCAATTTATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGC
AGCCCGAAAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAA
AGAACCCCACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTG
AAACTGAAGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGA
CATCGATGGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCA
TGGAAATCGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATAC
GATCTGTCCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACA
GTTGCGACTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAA
TACAGCAGGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGG
GACATGGAAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGA
TGAGCAGCTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACC
ATATTAAGGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAG
AAACGTGAAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATT
AACAGACCCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATA
TAGAAGAACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTT
AAGCTCACTCAGGATCAACTAATACCAAATTTTTCAATGAAGGAAGTGGT
TGACTCTTTTATTGCCGAGAATGAATGGTCTTTAGATTATGCAAGCTTTC
TAGACCATTCGTTTGGCGGGGCGGGCCCAGGTAAGTGGTCAT
FMO01186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHIP-RA | 1277 | CG5203-RA | 292..1158 | 24..890 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10438880..10439121 | 649..890 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 10438041..10438239 | 147..345 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 10438300..10438442 | 345..487 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 10437839..10437961 | 24..146 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 10438590..10438697 | 487..594 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 10438756..10438812 | 594..650 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:42 has no hits.
FMO01186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:39 Download gff for
FMO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5203-RA | 281..1164 | 15..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:34 Download gff for
FMO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 284..1167 | 15..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:41 Download gff for
FMO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 284..1167 | 15..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:41 Download gff for
FMO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10438041..10438239 | 147..345 | 100 | -> | Plus |
| 2L | 10438301..10438442 | 346..487 | 100 | -> | Plus |
| 2L | 10438591..10438696 | 488..593 | 100 | -> | Plus |
| 2L | 10438756..10438812 | 594..650 | 100 | -> | Plus |
| 2L | 10438882..10439130 | 651..901 | 98 | | Plus |
| 2L | 10437831..10437961 | 15..146 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:34 Download gff for
FMO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10438301..10438442 | 346..487 | 100 | -> | Plus |
| arm_2L | 10438591..10438696 | 488..593 | 100 | -> | Plus |
| arm_2L | 10438756..10438812 | 594..650 | 100 | -> | Plus |
| arm_2L | 10438041..10438239 | 147..345 | 100 | -> | Plus |
| arm_2L | 10437831..10437961 | 15..146 | 96 | -> | Plus |
| arm_2L | 10438882..10439130 | 651..901 | 98 | | Plus |
