Clone FMO01187 Report

Search the DGRC for FMO01187

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:87
Vector:pMK33-CFH-BD
Associated Gene/Transcriptboi-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01187.5prime Sequence

1207 bp (920 high quality bases) assembled on 2008-03-04

> FMO01187.5prime
CAGTCGACATGATCTGGTCTGGCAACGCCAGATATTCAAATGTTCAGAAT
TCGAGCATGGTGCCTCCGTCACGACCCAATGTCACCCGTCTGTCGGACGA
GTCCGTGATGCTGCGCTGGAGTGTGCCACAAAACTCTGGACTCCAGATCA
CCTTTTTCAAGGTGCAGTATCGCATGTTGGGCGACGGAAAAAATCGGAGG
AAGAACTGGCAGACGACCAGCGACAATATCCCGTACGGAAACGCGCACGG
ATCCGGGCCTGGCCAGGGGAACAGTCACTGGCGGGCGCGGAACCGGGACA
GGGAGTATGAAATGGGCAATCCGCCCAAGAACTTCACCTCCTCCGTTACG
GGACTGACCGCTGGCAAGTACTACCGCTTCCGGATCGTGGCGGTGTACTC
CAATAACGACAACAAGGAGGGTTTTTTCCTCCCTCAAGTTCTTCCTGCAG
AATGGAACGTCCAAGTCGAATCTGCCAGTGCCGGAACTACGCGAGGTGGA
GACGCTTTCCGAGTCGGCCGTGGTGCTCCATTGGTCCCTGGTATCCTCGA
CTCAAAATGAGGATATAGACGGGTACTATGCCTACTATAGGCCAGCGGAC
TCAGCAGCGGAGTATTTGAAGGCCACGGTGGATGGCGGAATGAGCAGGAG
CTTCAAGATAGACCTCCTTCGTCCAGGAACCCCTTATGAGTTCAAATTGC
AATCGTTCAACTCCGACGCAGCCTCTGAATTCAGTGCTATTCGGCAAGCG
AGGACCAGAAAAACGCACGAGCAACCGGCTTCATCTTCGGCCACGCCAGT
GCCAGCCAATAAGGCAGTGGAACAGCACCAGAACTCCTTTATATCCACTG
ATCGCAGTGCCGCTGGCGGAGGCATACTACTCCTCATCGCCTCATTGGTG
GTCTGCCTTTGCCTAAAGAGACGGGAAACTCTCAGCCGGAGATGAGAACA
AACCGCAATTGGAACACATCAGGCGGACTTTGTACCTCCGCGTCTGGGGA
GTTGGTGCCACCAAAAGTGGCGATGTAAGGCGCCTCACGGATTGATTCGA
GATGAATATTACGCCCATCGCTGCCAGGAACCGCATCGAATAGACACCTG
ACTGCATCGATGCTTTCCACGTCAAGCGTACATTCGCTGGACAGGCACAC
TCTGATGGCAAGGCACTGAACATACCCACACGATAGCTACGCCGGCGCTG
CGGTGTT

FMO01187.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
boi-RA 2721 CG32796-RA 194..1262 9..1067 4865 97.8 Plus
boi-RG 4544 CG32796-RG 1739..2764 52..1067 4650 97.7 Plus
boi-RF 4509 CG32796-RF 2025..3050 52..1067 4650 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2446890..2447597 760..52 3405 99 Minus
X 23542271 X 2446643..2446824 941..761 765 98.4 Minus
X 23542271 X 2447657..2447699 51..9 215 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:14:56 has no hits.

FMO01187.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:41 Download gff for FMO01187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32796-RB 1695..2744 48..1083 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:38 Download gff for FMO01187.5prime
Subject Subject Range Query Range Percent Splice Strand
boi-RA 185..1278 1..1083 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:11 Download gff for FMO01187.5prime
Subject Subject Range Query Range Percent Splice Strand
boi-RA 189..1282 1..1083 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:11 Download gff for FMO01187.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2446642..2446824 761..941 97 <- Minus
X 2446890..2447597 52..760 99 <- Minus
X 2447657..2447704 1..51 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:38 Download gff for FMO01187.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2340675..2340857 761..941 97 <- Minus
arm_X 2340923..2341630 52..760 99 <- Minus
arm_X 2341690..2341737 1..51 94   Minus