FMO01188.5prime Sequence
564 bp (564 high quality bases) assembled on 2008-03-04
> FMO01188.5prime
CAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGACCCAATCCG
GAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCTGGCAAGAC
CACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGTAACGCCCA
CGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCAAACTGAAT
GTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGGAAGAACTA
TTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTACAGATCGGA
CTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCATGGACAAT
CGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACACCCCTATGC
CGGATGCCATGAGTGCCGCCGATGTGGCCGAGAAGATGAGCTTGGTGCAA
CTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGGATGGCAC
TGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAGAAGGCAA
GCTTTCTAGACCAT
FMO01188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 836 | CG6560-RA | 214..750 | 9..546 | 2605 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21885762..21886035 | 546..272 | 1265 | 98.2 | Minus |
3R | 32079331 | 3R | 21886093..21886225 | 272..140 | 665 | 100 | Minus |
3R | 32079331 | 3R | 21886286..21886417 | 142..11 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:15 has no hits.
FMO01188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:42 Download gff for
FMO01188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-RA | 210..752 | 9..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:03 Download gff for
FMO01188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 9..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:01 Download gff for
FMO01188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 9..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:01 Download gff for
FMO01188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21885756..21886034 | 273..553 | 97 | <- | Minus |
3R | 21886093..21886224 | 141..272 | 100 | <- | Minus |
3R | 21886288..21886417 | 11..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:03 Download gff for
FMO01188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711478..17711756 | 273..553 | 97 | <- | Minus |
arm_3R | 17711815..17711946 | 141..272 | 100 | <- | Minus |
arm_3R | 17712010..17712139 | 11..140 | 100 | | Minus |