Clone FMO01188 Report

Search the DGRC for FMO01188

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:88
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdnd-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01188.5prime Sequence

564 bp (564 high quality bases) assembled on 2008-03-04

> FMO01188.5prime
CAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGACCCAATCCG
GAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCTGGCAAGAC
CACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGTAACGCCCA
CGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCAAACTGAAT
GTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGGAAGAACTA
TTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTACAGATCGGA
CTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCATGGACAAT
CGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACACCCCTATGC
CGGATGCCATGAGTGCCGCCGATGTGGCCGAGAAGATGAGCTTGGTGCAA
CTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGGATGGCAC
TGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAGAAGGCAA
GCTTTCTAGACCAT

FMO01188.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 836 CG6560-RA 214..750 9..546 2605 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21885762..21886035 546..272 1265 98.2 Minus
3R 32079331 3R 21886093..21886225 272..140 665 100 Minus
3R 32079331 3R 21886286..21886417 142..11 660 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:45:15 has no hits.

FMO01188.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:42 Download gff for FMO01188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-RA 210..752 9..553 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:03 Download gff for FMO01188.5prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 9..553 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:01 Download gff for FMO01188.5prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 9..553 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:01 Download gff for FMO01188.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21885756..21886034 273..553 97 <- Minus
3R 21886093..21886224 141..272 100 <- Minus
3R 21886288..21886417 11..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:03 Download gff for FMO01188.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17711478..17711756 273..553 97 <- Minus
arm_3R 17711815..17711946 141..272 100 <- Minus
arm_3R 17712010..17712139 11..140 100   Minus