FMO01189.5prime Sequence
1181 bp (993 high quality bases) assembled on 2008-03-04
> FMO01189.5prime
CAGTCGACATGTGTGACGAAGAAGTTGCTGCTCTGGTTGTCGACAACGGC
TCTGGCATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCCCGCGCCGT
CTTCCCATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGATGGTCGGCA
TGGGCCAGAAGGACTCGTACGTGGGTGATGAGGCGCAGAGCAAGCGTGGT
ATCCTCACCCTGAAGTACCCCATTGAGCACGGTATCGTGACCAACTGGGA
CGATATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGG
CACCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCGCTGAACCCCAAG
GCCAACCGTGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACACC
CGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGCCTCCGGTC
GTACCACCGGTATCGTTCTGGACTCCGGCGATGGTGTCTCCCACACCGTG
CCCATCTACGAGGGTTATGCCCTTCCCCATGCCATCCTGCGTCTGGATCT
GGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGACCGAGCGCG
GTTACTCTTTCACCACCACCGCTGAGCGTGAAATCGTCCGTGACATCAAG
GAGAAGCTGTGCTATGTTGCCCTCGACTTTGAGCAGGAGATGGCCACCGC
TGCCAGCAGCTCCTCGTTGGAGAAGTCCTACGAGCTGCCCGACGGACAGG
TGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGCCCTGTTCCAG
CCCTCGTTCTTGGGAATGGAGGCTTGCGGCATCCACGAGACCACCTACAC
TCCATCATGAAGTGTGATGTGGATATCCGTAAGGATCTGTATGCCAACAC
CGTGCTGTCCGGTGCACCACATGTACCCTGCATCGCGACGTATGCAGAAG
GAGATCACCGCCCTGCACGTCGACATGAGATCAGATCATTGCCCCGCCGA
GCGCAAGTACTCTGTCTGGATCGGTGGCTCCATCTGCTCCTGTCACATCC
AGAGAAGTAGATCTCAGCAGAATCAAGAAGTCCGCCCCTCATTGTGACCG
CAAGGCTTGAAGCTTCTAAACTTTCTAGGGCGGCCAGGTATGCCTATCTA
TCATACTAACCTATCACACACCTAGGAGTCG
FMO01189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act5C-RE | 2863 | CG4027-RE | 162..1199 | 9..1034 | 4890 | 98.8 | Plus |
| Act5C-RD | 1928 | CG4027-RD | 162..1199 | 9..1034 | 4890 | 98.8 | Plus |
| Act5C-RC | 2252 | CG4027-RC | 162..1199 | 9..1034 | 4890 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5902698..5903735 | 9..1034 | 4600 | 98.5 | Plus |
| 3R | 32079331 | 3R | 13426604..13427641 | 9..1034 | 3195 | 89.2 | Plus |
| 2R | 25286936 | 2R | 20944843..20945710 | 48..914 | 3150 | 91.1 | Plus |
| 3R | 32079331 | 3R | 15440616..15441520 | 9..912 | 2840 | 87.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:51 has no hits.
FMO01189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:26 Download gff for
FMO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4027-RA | 159..1210 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:25 Download gff for
FMO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RA | 162..1213 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:59 Download gff for
FMO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RC | 162..1213 | 9..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:59 Download gff for
FMO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5902698..5903749 | 9..1044 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:25 Download gff for
FMO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5796731..5797782 | 9..1044 | 98 | | Plus |
