FMO01190.5prime Sequence
1207 bp (977 high quality bases) assembled on 2008-03-04
> FMO01190.5prime
CAGTCGACATGATGAGCCTGACTGTGCTCTCGCCACCGCAACGTTTTAAG
CGAATCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTATATGACCCT
ACTGCTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGTGCCGCACA
GCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATCGCGACCAG
CTGCTCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCGGGGGCTGG
AGCTCCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGATATACGCA
GCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGGCCACGCTG
CTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTCCGCGATCT
GTCCCAAAGAGCGGTGACGGCGATACCACAGCCGCCGGTCACCGAGTTGG
ATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACGACACCCGG
CTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGATCAGACCTG
GTTCTTCACGGACACCGATGATCACTACTACCAGGAGAAGACAAAGGGCC
ATCTCATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGGCGCTTTGC
TGCAAAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGCAAAAAGTG
GTTCTGTCACTTCGACGATGACAACTATGTCAATGTGCCGAGGCTGGTCA
AACTGCTGGACGAGTATAGCCCCAGTGTGGATTGGTATCTGGGCAAGCCG
AGCATCTCGTCGCCGCTGGAGATCCACTTGGACAGCAAGAACACGACAAC
AAACAAGAAGATAACCTTCTGGTTCGCCACTGGCGGCGCTGGCTTCTGCC
TCAGTCGAGCCCTGACTTTAAAATGCTACCCATAGCAGGTGGTGCAAGTT
ATCAGCATTGGCCGACAAGATACGTTTTTCGGATGATGTCACAATGGGTT
TATTATGAACACCTTCTGAAGTACTTCTAACGGGGGGGAACACCTCCACT
TCGCATTGGGAGGCCATGGAGTCTACGCCAGCAAGTTCCAGGAACAGCGT
CTTCCAGCTATGCCCATGAAAAACCATGGACTGGATCAAGTGAACGCTCG
ATGACGAATCCAAGCTCAATCCTGACTCAGCTTTCCCTATTCACACTGCG
CCGCCCT
FMO01190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fng-RA | 1959 | CG10580-RA | 212..1341 | 9..1126 | 5030 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20943564..20943968 | 545..141 | 2010 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20927709..20927847 | 836..698 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 20949167..20949301 | 143..9 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 20926707..20926873 | 1001..837 | 625 | 97 | Minus |
| 3L | 28110227 | 3L | 20935411..20935515 | 699..595 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 20936666..20936717 | 594..543 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:05 has no hits.
FMO01190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:26 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:48 Download gff for
FMO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..1227 | 5..1020 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:20 Download gff for
FMO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..1227 | 5..1020 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:20 Download gff for
FMO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20926699..20926873 | 837..1007 | 96 | <- | Minus |
| 3L | 20927709..20927847 | 698..836 | 100 | <- | Minus |
| 3L | 20935413..20935515 | 595..697 | 100 | <- | Minus |
| 3L | 20936666..20936714 | 546..594 | 100 | <- | Minus |
| 3L | 20943564..20943968 | 141..545 | 99 | <- | Minus |
| 3L | 20949170..20949304 | 5..140 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:48 Download gff for
FMO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20919799..20919973 | 837..1007 | 96 | <- | Minus |
| arm_3L | 20920809..20920947 | 698..836 | 100 | <- | Minus |
| arm_3L | 20928513..20928615 | 595..697 | 100 | <- | Minus |
| arm_3L | 20929766..20929814 | 546..594 | 100 | <- | Minus |
| arm_3L | 20936664..20937068 | 141..545 | 99 | <- | Minus |
| arm_3L | 20942270..20942404 | 5..140 | 98 | | Minus |
