FMO01193.5prime Sequence
410 bp (410 high quality bases) assembled on 2010-02-19
> FMO01193.5prime
CAGTCGACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACC
TTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCA
GGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCA
AGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAG
TCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATTGAGCCCTC
GCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCCGCA
AGTGCTACGCCCGTCTGCATCCTCGTGCCACCAACTGCCGCAAGAAGAAG
TGCGGACACACCAACAACCTGCGCCCCAAGAAGAAGTTGAAGGCAAGCTT
TCTAGACCAT
FMO01193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL40-RB | 659 | CG2960-RB | 123..506 | 9..392 | 1920 | 100 | Plus |
| RpL40-RA | 587 | CG2960-RA | 65..448 | 9..392 | 1920 | 100 | Plus |
| Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 9..238 | 790 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4228025..4228408 | 9..392 | 1920 | 100 | Plus |
| 3L | 28110227 | 3L | 3899706..3899935 | 238..9 | 790 | 89.6 | Minus |
| 3L | 28110227 | 3L | 3900162..3900391 | 238..9 | 790 | 89.6 | Minus |
| 3L | 28110227 | 3L | 3900846..3901075 | 238..9 | 790 | 89.6 | Minus |
| X | 23542271 | X | 6278294..6278521 | 235..8 | 765 | 89 | Minus |
| 3L | 28110227 | 3L | 3900618..3900847 | 238..9 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3901074..3901303 | 238..9 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3899934..3900163 | 238..9 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3900390..3900619 | 238..9 | 760 | 88.7 | Minus |
| 3L | 28110227 | 3L | 3899477..3899707 | 239..9 | 750 | 88.3 | Minus |
| 3L | 28110227 | 3L | 3901302..3901531 | 238..9 | 745 | 88.3 | Minus |
| 3L | 28110227 | 3L | 3901530..3901759 | 238..9 | 730 | 87.8 | Minus |
| 2L | 23513712 | 2L | 10409731..10409958 | 9..236 | 705 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:48 has no hits.
FMO01193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2010-07-30 09:24:22 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:53 Download gff for
FMO01193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..448 | 9..392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:06 Download gff for
FMO01193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL40-RA | 65..448 | 9..392 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:06 Download gff for
FMO01193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4228025..4228408 | 9..392 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:53 Download gff for
FMO01193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4228025..4228408 | 9..392 | 100 | | Plus |
