FMO01194.5prime Sequence
610 bp (610 high quality bases) assembled on 2008-03-03
> FMO01194.5prime
GAAGAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATC
ACGGGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTG
CAGCAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGA
TAATGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATT
ACAAACTCATCTACAGACACTATGCCACCCTGTACTTCGTTTTCTGCGTG
GACTCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGT
GGAAACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATAT
TCCACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGA
ATGGTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCA
GAACAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAG
CTGTGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATC
AAGCTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCGCAAGCTT
TCTAGACCAT
FMO01194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| or-RA | 823 | CG3029-RA | 75..654 | 13..592 | 2855 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23968562..23968774 | 380..592 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 23968304..23968508 | 179..383 | 1010 | 99.5 | Plus |
| 2R | 25286936 | 2R | 23968153..23968244 | 89..180 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 23968013..23968089 | 13..89 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:26 has no hits.
FMO01194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:37 Download gff for
FMO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3029-RA | 65..655 | 8..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:15 Download gff for
FMO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 70..660 | 8..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:03 Download gff for
FMO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 70..660 | 8..596 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:03 Download gff for
FMO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23968008..23968088 | 8..88 | 95 | -> | Plus |
| 2R | 23968153..23968244 | 89..180 | 100 | -> | Plus |
| 2R | 23968306..23968508 | 181..383 | 99 | -> | Plus |
| 2R | 23968566..23968780 | 384..596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:15 Download gff for
FMO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19855531..19855611 | 8..88 | 95 | -> | Plus |
| arm_2R | 19855676..19855767 | 89..180 | 100 | -> | Plus |
| arm_2R | 19855829..19856031 | 181..383 | 99 | -> | Plus |
| arm_2R | 19856089..19856303 | 384..596 | 99 | | Plus |
