FMO01195.5prime Sequence
710 bp (710 high quality bases) assembled on 2008-03-04
> FMO01195.5prime
TTTATACGAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAA
ATCGTCCTGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCG
CTTTACTCAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGG
ATTTCATGATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAA
ATCTGGGACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTA
CTATCGATCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGC
CCACATTTGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCC
AACTCCAAGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGA
TCGAGAGATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACA
TGTACTTCTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTG
TTCTACGAGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGG
CAGTAGTTCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCT
CCATCGGACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGT
GGCGGACTCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCGCAAGCTT
TCTAGACCAT
FMO01195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab30-RD | 1305 | CG9100-RD | 435..1103 | 24..692 | 3345 | 100 | Plus |
| Rab30-RC | 2055 | CG9100-RC | 443..1111 | 24..692 | 3345 | 100 | Plus |
| Rab30-RB | 1970 | CG9100-RB | 358..1026 | 24..692 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7031437..7032105 | 692..24 | 3345 | 100 | Minus |
| X | 23542271 | X | 20252273..20252324 | 180..231 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:02 has no hits.
FMO01195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:26 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:52 Download gff for
FMO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 16..698 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:57 Download gff for
FMO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 16..698 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:57 Download gff for
FMO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7031432..7032110 | 18..698 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:52 Download gff for
FMO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7031432..7032110 | 18..698 | 98 | <- | Minus |
