Clone FMO01196 Report

Search the DGRC for FMO01196

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:96
Vector:pMK33-CFH-BD
Associated Gene/Transcriptm2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01196.5prime Sequence

696 bp (696 high quality bases) assembled on 2008-03-04

> FMO01196.5prime
TAAAATACGAAGTTATCAGTCGACATGTATCTGGATACGAAAAACCTGAC
AGCCAGCAGCACTTCAGCACTGACAGCGGCCACAGCATCGAACTCAAAGT
CAACACGGCGCATGCGTAACGTGTGGAAACCGCTGAGTCGCCTACTGAAA
GTGGGTGGCAAAGGTCGCACCGCACAGGCGACCTTGGCCCATCCCAACAA
CGTGGATCTCAACAACACACAGCAGCAGCAACAGCAGCAGCAGCAGGAGT
TGCTCATTGAAGATGACACCAAGTCAACGCCAGAGGAGTCTATCCACAAG
TACGGTCTGGAGCTGAGGCAATTGCCCGAGGAGGAGCAGGTGTCCCTCAC
CCAACCGCCCAACACACCCACATTGATTAGCAGCGTGCATGTGGACAAGG
TCAGCGCCCAGAGCTGCGGCAACTGCCAACACGGACGCAACTGCCAGCAT
CGACATCACAGCAGCAGCAACATCAACAGTAGCAGCAGCAGCAGCAATAT
GAACAGCAGCAGTGCAACACAGTTGCCCAGTAATCTCTGGGATCTGCAGT
TGCCCCTCCAATACATCAGCACGGACAATGGCACCTTCTTCTGGGCCAAC
ACCCAGGATCGGGTGGACGATGATCTTCTGCACGCCTTGCTTTGACAGAG
CTTCAGTCAGCTGCCCGGAACGCTCTGCGCAAGCTTTCTAGACCTT

FMO01196.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m2-BFM-RA 957 CG6104-RA 107..762 23..678 3235 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26016709..26017364 678..23 3235 99.5 Minus
Blast to na_te.dros performed on 2014-11-28 21:45:09 has no hits.

FMO01196.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:38 Download gff for FMO01196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6104-RA 102..767 17..686 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:59 Download gff for FMO01196.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m2-BFM-RA 102..767 17..686 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:59 Download gff for FMO01196.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m2-BFM-RA 102..767 17..686 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:59 Download gff for FMO01196.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26016704..26017369 17..686 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:59 Download gff for FMO01196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21842426..21843091 17..686 98   Minus