FMO01201.5prime Sequence
566 bp (566 high quality bases) assembled on 2008-03-12
> FMO01201.5prime
ATAAAACAAAGTTATCAGTCGACATGGGAAAGTTACTATCAAAAATTTTC
GGCAACAAGGAAATGCGAATTCTCATGCTCGGACTGGACGCGGCTGGAAA
AACAACGATTCTGTACAAACTGAAACTTGGCCAATCTGTTACAACGATAC
CCACTGTGGGCTTTAATGTGGAAACCGTCACCTATAAGAATGTCAAGTTC
AATGTGTGGGACGTCGGTGGGCAGGATAAGATTCGACCGCTATGGCGACA
CTATTACACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATC
GGGATCGGATAGACGAGGCGCGCACGGAGCTGCATAGGATAATTAACGAT
AGGGAGATGCGCGACGTCATCTTACTGATATTTGCTAACAAGCAGGATCT
GCCTGATGCAATGAAACCCCATGAAATCCAGGAAAAACTAGGTTTAACTA
GAATAAGAGATCGCAATTGGTATGTACAACCATCATGTGCCACATCCGGC
GATGGCCTGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATAAGTTAGC
AAGCTTTCTAGACCAT
FMO01201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 281..806 | 23..548 | 2600 | 99.6 | Plus |
| Arf51F-RA | 1352 | CG8156-RA | 276..801 | 23..548 | 2600 | 99.6 | Plus |
| Arf51F-RC | 1370 | CG8156-RC | 294..819 | 23..548 | 2600 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 102..408 | 1490 | 99 | Plus |
| 2R | 25286936 | 2R | 15324201..15324341 | 408..548 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 15323483..15323565 | 23..105 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 22869850..22869953 | 151..48 | 220 | 80.8 | Minus |
| 4 | 1348131 | 4 | 1124442..1124648 | 85..291 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:57 has no hits.
FMO01201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:41 Download gff for
FMO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8156-RE | 264..797 | 14..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:42 Download gff for
FMO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 14..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:20 Download gff for
FMO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 14..548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:20 Download gff for
FMO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323475..15323565 | 14..105 | 96 | -> | Plus |
| 2R | 15323845..15324147 | 106..408 | 99 | -> | Plus |
| 2R | 15324202..15324341 | 409..548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:42 Download gff for
FMO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11211707..11211846 | 409..548 | 100 | | Plus |
| arm_2R | 11210980..11211070 | 14..105 | 96 | -> | Plus |
| arm_2R | 11211350..11211652 | 106..408 | 99 | -> | Plus |
