FMO01203.5prime Sequence
833 bp (833 high quality bases) assembled on 2008-03-12
> FMO01203.5prime
ATAATACAAAGTTATCAGTCGACATGGCTCGCCGCTATGATTCCCGCACC
ACGATCTTCTCGCCGGAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGA
GGCCATCTCGCACGCCGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCA
TCCTGTTGGCAGCCGAGTGCCGCAGCACAAACAAATTGCTGGACAGCGCC
ATTCCTTCGGAGAAGATCTATCGCCTGAACGACAACATGGTCTGCTCGGT
GGCTGGCATCACCTCCGATGCCAATGTGCTGACCTCAGAACTGCGTCTGA
TTGCCCAGCGTTACCAGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAG
CTGGTGTCGCACCTCTGCGACATCAAACAGGCGTACACTCAGTACGGCGG
AAAGCGTCCCTTCGGCGTCTCGCTGCTCTACATGGGATGGGACAACAAGT
ACGGCTACCAACTGTACCAGTCGGATCCCAGCGGCAACTACGGCGGATGG
AAGGCCACCTGTATTGGCAACAACTTCGGTGCCGCGATCTCCATGCTGAA
GCAGGAGCTGGCCGATAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCA
AGGATTTGGCCATCAAGGTACTGAGCATGACCCTGGACACCACCAAGCTG
ACCCCGGAGAAGGTCGAGATGGCCACGCTGCAGCGTGTGGACAATAAGAC
CGTATACAGTGTCCTGGAGATACCCGATGTGGAGAAGCTGATCGAGAAGT
ACACAAAGGTACAGGCGGAGGCCGAGGCTGCCAAGAAAGAGAAGCAAGCG
AAGCAGCCGACCAGGGCAAGCTTTCTAGACCAT
FMO01203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 973 | CG9327-RA | 92..881 | 24..813 | 3920 | 99.7 | Plus |
| Prosalpha3T-RA | 889 | CG1736-RA | 50..526 | 39..518 | 395 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20995446..20996026 | 233..813 | 2875 | 99.7 | Plus |
| 2R | 25286936 | 2R | 20995102..20995308 | 26..232 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 31122890..31123119 | 518..289 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:32 has no hits.
FMO01203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:42 Download gff for
FMO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9327-RA | 86..884 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:11 Download gff for
FMO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:13 Download gff for
FMO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:13 Download gff for
FMO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20995097..20995308 | 19..232 | 98 | -> | Plus |
| 2R | 20995446..20996031 | 233..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:11 Download gff for
FMO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16882602..16882813 | 19..232 | 98 | -> | Plus |
| arm_2R | 16882951..16883536 | 233..819 | 99 | | Plus |
