Clone FMO01207 Report

Search the DGRC for FMO01207

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:7
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6359-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01207.3prime Sequence

542 bp (-542 high quality bases) assembled on 2008-03-12

> FMO01207.3prime
ATGGTCTAGAAAGCTTGCTGTGTTCCGAATCTTGCCGGGCACGTAGTTCT
TATCTATGACATTCTCCTGCAGGAACATATGCAGGCAGCGCTCGTTCTGC
GCCAAAAAGATGTCCGGCTATCTTGTTGATGAAGGCCTCCAGTCCCTTGC
GCCGCTCCTCGATGAAGCTTTCGTCAAAGATGCCCTCGTCGCCGCGGAAG
GGCATCTGCCGCTTCCATGCCTTTCCTGGGAGTGGTGGCACCACAATCTT
GCTATCCCGCTCCAGCTCGTTTCGCAGCCACTCAAAGTCGCTGTAGCGTC
GCCTGACACTGGACTCCTTTACCTTAAAGACGGGCAGATTGGTCCGCATC
CGGACCTCGTAGTCCGTGTAGCGCTTCTTGCCCGCCGCCATGGTGGTCAG
CGGATTGACCACGTCGATCTCCAGGAAGTTGGCGGGCACGGCGTACGCAT
CGTCCAGTGTTTGCTTCTTCACGTTTAGGCGGCGGGTGGCGTCGGCGGTT
CCATCGGACTCAACCATCATGTCGACTGATAATTGTTTTTAT

FMO01207.3prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-RB 1860 CG6359-RB 314..814 520..19 2440 99.2 Minus
Snx3-RA 1426 CG6359-RA 314..814 520..19 2440 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12629220..12629449 249..19 1060 98.3 Minus
3R 32079331 3R 12628344..12628520 520..344 885 100 Minus
3R 32079331 3R 12628888..12628984 344..248 485 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:32:04 has no hits.

FMO01207.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:21 Download gff for FMO01207.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 297..813 8..528 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:34 Download gff for FMO01207.3prime
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 307..823 8..528 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:33 Download gff for FMO01207.3prime
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 307..823 8..528 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:33 Download gff for FMO01207.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12629222..12629458 8..247 96   Minus
3R 12628337..12628520 344..528 97 -> Minus
3R 12628889..12628984 248..343 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:34 Download gff for FMO01207.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8454059..8454242 344..528 97 -> Minus
arm_3R 8454611..8454706 248..343 100 -> Minus
arm_3R 8454944..8455180 8..247 96   Minus