FMO01208.5prime Sequence
1174 bp (972 high quality bases) assembled on 2008-03-12
> FMO01208.5prime
ATAATACAAAGTTATCAGTCGACATGGTCAACAACGCCTCGGCGGCGGTC
CAGGGTCAGGGTCCCAGTCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGT
GGGCAGTCGTTCCGGACGGAGTTACCTGGAGCGAATGGCCTCGGCGCCGC
TACTCACCAATCAGCCCAAATCCTGTCTCAGCCGCAAATCCTGCCTGCAC
AAATCCCAGAACACTACAGCCAGTTCCGCAGATCTCTCGCCGACGGACAC
CGATGTCGCGGACAGTGCCAGTCATAGCTGTATCTGCAGCAAGGATAGTG
ACAGCAACGGCGAAGTGAGCCGTGGCCCCAAAAAGCATGTGATCTTCGCT
GATGATGAGGGTCTATCGCTAACCGAGGTTCGTGTGATGTCCGAACCCTC
GAATGTGCCGCCATATTGGAGCATGAAGTTTCTGGAGCAAATTACACAGG
GCCTGGTCAGCCCACATCCTCCGGATCAGTGGACAGTGGACTTCAAGCAG
CCAGCCTCAGACTATCTATCATTTAGACAAAAGATAGAACGCGACTTTGT
TTCCTTGGAGAATGTGATCGTCAAGGATGAGGAATCGATTGTCGTGGGCA
CCATCAAGGTGAAGAATATCGACTTCCAGAAGGAGATCATTGTCCGTGTG
ACCTGGGATGATTGGAAGAGCCAGCAGGATATCTTCTGTACATACGCCAG
GGCCTATGGACCGGCTACTTGTGCTCATGTAGTCTTCGATACATTCTCCT
TCAAAATCACCTTGCCGCCATCCTCCAAGCGCCTGGAATTCTGCATCTGC
TATCGCACCAACGAAACAGAATATTGGGATAATAATGATGGTAAAACTAC
ACCATTAGCAAGCGATCGCCCTTTTATTACAACGCCTTGTCGCCCTATGA
TAGGTTCAGATCGCAACTCGAGCCAGCAATAAGTCCACCCTGACCGATGC
CTTGGCCAGTGCAGACCAAATGGCTGCACCAGGAGCCACATTACGCCATA
TTGGGCAGCTTTCTAGACATTCGTTGGCGGCGGGCCAGGTAGTGTCATAT
CTATTCATATCAATCTAATCCACACTTGGCTAAGGAGATCTGTCTTGACT
ATGCCTTGATTCCACAATAAAGCCGGGGACCGAGCGTTCTGAACAATTCG
AATGGAGTTTGAGGCTTTATCCTG
FMO01208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gbs-70E-RC | 2846 | CG9238-RC | 671..1661 | 23..1004 | 4680 | 98.8 | Plus |
| Gbs-70E-RB | 2737 | CG9238-RB | 671..1661 | 23..1004 | 4680 | 98.8 | Plus |
| Gbs-70E-RA | 2084 | CG9238-RA | 509..1499 | 23..1004 | 4680 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14542354..14542669 | 840..525 | 1580 | 100 | Minus |
| 3L | 28110227 | 3L | 14547117..14547413 | 319..23 | 1485 | 100 | Minus |
| 3L | 28110227 | 3L | 14542733..14542941 | 526..318 | 1045 | 100 | Minus |
| 3L | 28110227 | 3L | 14542172..14542291 | 958..843 | 390 | 94.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:45 has no hits.
FMO01208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:46 Download gff for
FMO01208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9238-RB | 664..1657 | 17..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:21 Download gff for
FMO01208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9238-RA | 506..1499 | 17..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:20 Download gff for
FMO01208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gbs-70E-RA | 506..1499 | 17..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:20 Download gff for
FMO01208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14542733..14542939 | 320..526 | 100 | <- | Minus |
| 3L | 14542122..14542295 | 840..1004 | 93 | <- | Minus |
| 3L | 14542355..14542667 | 527..839 | 100 | <- | Minus |
| 3L | 14547117..14547416 | 17..319 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:21 Download gff for
FMO01208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14535222..14535395 | 840..1004 | 93 | <- | Minus |
| arm_3L | 14535455..14535767 | 527..839 | 100 | <- | Minus |
| arm_3L | 14535833..14536039 | 320..526 | 100 | <- | Minus |
| arm_3L | 14540217..14540516 | 17..319 | 99 | | Minus |
