Clone FMO01209 Report

Search the DGRC for FMO01209

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG2617-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01209.5prime Sequence

863 bp (863 high quality bases) assembled on 2008-03-12

> FMO01209.5prime
ATAATACAAAGTTATCAGTCGACATGCTGGACGCTCTAATTCGGGCAGCG
GAGCTTGTGGATCTGGTCCTGCTGCGTCCGCTGGCCAGCGTGATTGATGC
AGTGATTACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCGTCGGCT
TCTGTTTGGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGATGCGCG
GTCAGGAATATCAACGAGGGCATCCGCGACTTGGGCCTCATCACGCTAGA
TGTGGCGGACTACTTCTACGGCGGCACCAAAGGCGGGCTCAAGAATGTAC
TCGATTTTGGTCACTGCATATCCCGATTCATCTGCAACTTACTCATCGAT
CTGGGTGATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGCCATACT
ATTCCTCTGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCGTGGCCC
ATGGCTTGAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGATTGGCC
CTGCTCCTCGTTCTCTATATGTTCCGCCGCTATGTGTACCTGATGCTCAT
CTACCTGCTGCAACGTGGACGCATTGAAATCTCGACGAAGACGCAAAGCG
TTTACCTATGGACCCATCATAAATTGCAACACTTCATACACAATGTTTGG
TATGTGTCAGAGAACGCAGGATCCGCGAGTCCAGAACGCTGTGTCGTGTG
CATGGCTCAAAGCAGGAACGTAGTAGTCATGCCATGCCGGCACCTCTGCC
TCTGCAAAGAGTGCTCCCTGCAGCTCGTGCTCCTTTTAGAAGACCGCTGT
CCTGTCTGCAGGCACAACATTACGTCGTTCCTGTCAGTTTACGTTGCAAG
CTTTCTAGACCAT

FMO01209.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2617-RB 1062 CG2617-RB 81..903 23..845 4115 100 Plus
CG2617-RA 1262 CG2617-RA 81..903 23..845 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20682448..20683270 23..845 4115 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:25:59 has no hits.

FMO01209.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:23 Download gff for FMO01209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 76..901 20..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:58 Download gff for FMO01209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 78..903 20..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:00 Download gff for FMO01209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2617-RA 78..903 20..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:00 Download gff for FMO01209.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20682445..20683267 20..842 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:58 Download gff for FMO01209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20682445..20683267 20..842 99 -> Plus