FMO01212.5prime Sequence
1115 bp (244 high quality bases) assembled on 2008-03-12
> FMO01212.5prime
AAAAAACCAAGTTATCAATCCACATGGAGCAAATGGAAGTGCCACGTTGA
CATGTCGGCCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTA
TGGCAGTGGATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATA
ATGGCTGCAGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCT
GGTCATAATGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACG
GTGAGCCGCGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGC
AACATTGAGATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGA
TGAAACAGTGATCAACAAGGACTACTACGACAAGAAGGAACAACAGTACA
AGCAGGTGTTCAGTGATCTCAACTTCATAGGCTGGTACACAACCGGCGAC
CATCCCACTGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAA
CGAGTGCCCCATCATGCTACAGCTGAATCCGCTCTCCCGCAACGTCGACC
ACCTTCCCCTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAG
GCCACCATGCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGC
GGAGCGCATTGGTGTGGATCATGTGGCGCGCATGACCTCGAACGAGTCCG
GCGAGAAGAGCGTGGTGGCGGAGCATTTGGTGGCCCAGGACAGTGCCATT
AAGATGCTAAATACACGCATCAAGATCGTGCTGCAATACATACGCGATGT
GGAGGCCGGAAAGCTGCGGGCCACCAAGAAATTCTGCGAGATGCTACGCT
CTCTGCACCGACTGCCCGTCATGCAAGTGCCCGCCTTCAAGAGGTATTTC
TACACGCAGTGCCAGCGATGTGGACTGATTAGCACCTGAGCACGCTGGAC
CAAAGCTGCCATGAATTTCACCACTTTGTGAACCAGTTTATTATGCTGTA
CGACCCGCCAGGGATCCGCTGCGCTCCCATGCGAAGCTTCTACTATGCAG
CTACTAAGCCATTCGTTTGAGCGCGGGGCCCAGGGAAAGTGGACAATAAT
CTGATACATACAATC
FMO01212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN6-RA | 1203 | CG6932-RA | 122..1145 | 23..1046 | 4445 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22581331..22581950 | 403..1019 | 2385 | 94.9 | Plus |
| 3R | 32079331 | 3R | 22580894..22581278 | 23..408 | 1850 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:51 has no hits.
FMO01212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:16 Download gff for
FMO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6932-RA | 120..1143 | 23..1046 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:54 Download gff for
FMO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 122..1145 | 23..1046 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:52 Download gff for
FMO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 122..1145 | 23..1046 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:52 Download gff for
FMO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22580894..22581275 | 23..405 | 99 | -> | Plus |
| 3R | 22581334..22581975 | 406..1046 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:54 Download gff for
FMO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18406616..18406997 | 23..405 | 99 | -> | Plus |
| arm_3R | 18407056..18407697 | 406..1046 | 94 | | Plus |
