FMO01213.5prime Sequence
1163 bp (972 high quality bases) assembled on 2008-03-12
> FMO01213.5prime
AAAAAACAAAGTTATCAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGA
CTGCTGATCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTGG
CCAGCTCCTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCC
GCAGTCTGGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTGT
GTGGCGGAATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCA
GGACGAGCAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAACC
ACACGTACGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCTG
GGCAATCTGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGT
TCCGGTCCTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACC
GCAACTTCGAGAAGGACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGTC
TTCTCCTATCCGGATCCCGTGTGGCTACTGCTGAACGCGGAGGGCACCCG
TTTCACACCCGCCAAACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGAG
GTCTTCCCCTCCTCAAGCACCATCTGATTCCGCGCACTAAGGGATTCACG
ACCAGTCTGCCCACCATGCGTGGCATCTGTCCTGCCATCTACGACATCAA
TCTGGCCTTCAAGAAGAATGCCGAGCCAAAGCCCACCATGCTGTCCCAGT
TGAACGGAGAGCCCGTGGAACCGTACATGTACATTCGCCGAGTGCCACTG
GACGTGGTTCCCGATGACGAGAAAGAGGCCGCCGCCTGGATGCAGGACTT
CTTTGCGGAAAAGGACAGATCATCGACAGCTTCCACGAGACCGGCAGCTT
CTTTAGAATTCCGGAGTCAAGGAGTGCCCGAGAAATCTACAAGCCGCGCC
TGAGCACGCCCTCAACTTCTGGGCTGACCACTTTGCGTCTGTGCATCTGC
ACTACTTGGTCACCTCGCTGGTGCGCACTGATGGCTCATCACGTTCTTCA
TTGGGAGATTCTATAGCCTCATGGAATCCCTTGATGCTTCAGAATCCAAG
CCTCTCGCATGGACACCTGCGGCGAAGCAGCTTCAGAACATTCGTTTGGC
CCGCGGGCCTGTA
FMO01213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4753-RC | 1575 | CG4753-RC | 280..1357 | 24..1077 | 4785 | 97.5 | Plus |
| CG4753-RA | 1355 | CG4753-RA | 60..1137 | 24..1077 | 4785 | 97.5 | Plus |
| CG4753-RB | 1570 | CG4753-RB | 275..1352 | 24..1077 | 4785 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16379700..16380235 | 725..190 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 16379378..16379629 | 970..724 | 995 | 97.6 | Minus |
| 3L | 28110227 | 3L | 16380471..16380636 | 189..24 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 16383353..16383787 | 703..269 | 540 | 74.9 | Minus |
| 3L | 28110227 | 3L | 16382559..16382670 | 905..795 | 225 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:20 has no hits.
FMO01213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:27 Download gff for
FMO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RA | 55..1064 | 24..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:53 Download gff for
FMO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1284 | 16..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:10 Download gff for
FMO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1284 | 16..1022 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:10 Download gff for
FMO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16379320..16379627 | 726..1022 | 95 | <- | Minus |
| 3L | 16379700..16380235 | 190..725 | 100 | <- | Minus |
| 3L | 16380471..16380642 | 18..189 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:53 Download gff for
FMO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16372420..16372727 | 726..1022 | 95 | <- | Minus |
| arm_3L | 16372800..16373335 | 190..725 | 100 | <- | Minus |
| arm_3L | 16373571..16373742 | 18..189 | 97 | <- | Minus |
