FMO01214.5prime Sequence
939 bp (939 high quality bases) assembled on 2008-03-12
> FMO01214.5prime
TATAATACAAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCG
CCTGGTGACCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAAC
ACTGTATGGTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAG
TGGCTGCGGGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCAC
ATTGGAGCAGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACT
GGGACTGCCTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCT
CGGGGTCACCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAA
CCTGGTCTCCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTA
ACTGGGGCAGAAATGGCCTGGGACTCGCCCTGCTTTCTGAGGAGCAGAGC
AGCAGTCTGAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAG
CAACATGACCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCA
CGAAGCCCAATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATG
GATGCATTTAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACC
GCTGCTGCCCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATA
AGTACCAGCGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGC
TTCTATGCGCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGT
GACCGCCGGCATTTTGGCCTTTGTCTTGTTCGTCTATCTTATGGCCTGGC
TGGGTCGCGGAGGATCTGATGCCGTGGACGAGGGCTGGAATAACCCCAAT
CCACAGCCGAACCACTACGAAGCAAGCTTTCTAGACCAT
FMO01214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5382-RB | 1165 | CG5382-RB | 171..1067 | 25..921 | 4470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22364671..22364958 | 921..634 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 22365019..22365225 | 634..428 | 1005 | 99 | Minus |
| 3R | 32079331 | 3R | 22365276..22365469 | 432..239 | 970 | 100 | Minus |
| 3R | 32079331 | 3R | 22365537..22365650 | 238..125 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 22365712..22365813 | 126..25 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:08 has no hits.
FMO01214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:29 Download gff for
FMO01214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 160..1065 | 13..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:54 Download gff for
FMO01214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 162..1067 | 13..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:03 Download gff for
FMO01214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 162..1067 | 13..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:03 Download gff for
FMO01214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22364671..22364957 | 635..921 | 100 | <- | Minus |
| 3R | 22365019..22365220 | 433..634 | 99 | <- | Minus |
| 3R | 22365276..22365469 | 239..432 | 100 | <- | Minus |
| 3R | 22365537..22365648 | 127..238 | 100 | <- | Minus |
| 3R | 22365712..22365816 | 22..126 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:54 Download gff for
FMO01214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18190998..18191191 | 239..432 | 100 | <- | Minus |
| arm_3R | 18191259..18191370 | 127..238 | 100 | <- | Minus |
| arm_3R | 18191434..18191538 | 22..126 | 99 | <- | Minus |
| arm_3R | 18190393..18190679 | 635..921 | 100 | <- | Minus |
| arm_3R | 18190741..18190942 | 433..634 | 99 | <- | Minus |
