FMO01216.5prime Sequence
1044 bp (836 high quality bases) assembled on 2008-03-12
> FMO01216.5prime
ATATGAAATAATTATCAGTCGACATGGAGTACCTCTACAAGTAGTATGCA
TTGCGAAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCG
TGCCCCACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAA
TACGTGCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGC
TTACAGTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACA
TTACCAAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAG
CAGCAGCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGG
CCAGAACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGG
TCAACTCCGGCGGTGCCGGTGGCGGCAACTATGGTAACGGGAATGTCCAG
AGCATCGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAG
CCAATTGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCC
GCGCCCTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGC
GACTGCCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCT
GATGCTCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACT
GCGCCGCCTGCAGCCAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCA
GGACAATGTCTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACA
GATTGTGTGTGGGCGACCGTTTCTACCTGTGCGAAAACCAGATACTCTGC
GAGTACGACTATGAGGAGCCGCCTGGTCTTCGCATCGATGGCCAATCATC
CGATGCCTCAGGCGACATCGTCTCCTTCTTTGGGCAAGGCTCAACGACGG
AAGCGGCTTGGGGCGCACATACCGCTGTTGATTGCTGGGCGGCGGAACTC
GGTGCGGCAATGTAATGGCGTTGGGCATGGTCATACGGATCGGC
FMO01216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx-RB | 2051 | CG44425-RB | 102..1123 | 19..1039 | 4515 | 96.9 | Plus |
| Bx-RD | 2494 | CG44425-RD | 761..1566 | 233..1039 | 3500 | 96.4 | Plus |
| Bx-RC | 3413 | CG44425-RC | 597..1402 | 233..1039 | 3500 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18566696..18567138 | 235..677 | 2185 | 99.5 | Plus |
| X | 23542271 | X | 18566407..18566624 | 19..234 | 995 | 98.2 | Plus |
| X | 23542271 | X | 18570561..18570793 | 799..1033 | 545 | 86 | Plus |
| X | 23542271 | X | 18567509..18567636 | 676..801 | 530 | 96.1 | Plus |
Blast to na_te.dros performed 2014-11-28 21:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 464..500 | 122 | 81.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2767..2802 | 469..504 | 117 | 80.6 | Plus |
FMO01216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:51 Download gff for
FMO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6500-RB | 65..961 | 10..906 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:21 Download gff for
FMO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 96..992 | 10..906 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:09 Download gff for
FMO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 96..992 | 10..906 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:09 Download gff for
FMO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18566401..18566624 | 10..234 | 96 | -> | Plus |
| X | 18566696..18567138 | 235..677 | 99 | -> | Plus |
| X | 18567511..18567636 | 678..801 | 97 | -> | Plus |
| X | 18570564..18570667 | 802..906 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:21 Download gff for
FMO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18460434..18460657 | 10..234 | 96 | -> | Plus |
| arm_X | 18460729..18461171 | 235..677 | 99 | -> | Plus |
| arm_X | 18461544..18461669 | 678..801 | 97 | -> | Plus |
| arm_X | 18464597..18464700 | 802..906 | 96 | == | Plus |
