FMO01217.5prime Sequence
737 bp (737 high quality bases) assembled on 2008-03-12
> FMO01217.5prime
ATAAAACCAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGT
GCCGCCGAGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACC
CAGCACAACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCG
GAACTCCGCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCC
TCCGGGAGCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAAC
AACGCCCAGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGA
AGGAGCTGGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGG
CCCAAGGGCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACC
CGGATCCGTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGC
CGGAGTATCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTAT
CACTGCAACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGA
CAACTGGTCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCT
CCCTGCTCACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCC
ACGCAATATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTG
GACAAAAAGGTACGCAACAGCAAGCTTTCTAGACCAT
FMO01217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc2-RD | 1625 | CG6720-RD | 372..1067 | 24..719 | 3465 | 99.9 | Plus |
| Ubc2-RC | 2111 | CG6720-RC | 305..1000 | 24..719 | 3465 | 99.9 | Plus |
| Ubc2-RB | 1349 | CG6720-RB | 96..791 | 24..719 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10766391..10766991 | 624..24 | 2990 | 99.8 | Minus |
| 2L | 23513712 | 2L | 1334347..1334718 | 297..668 | 495 | 75.5 | Plus |
| 2L | 23513712 | 2L | 10766189..10766278 | 711..622 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:40 has no hits.
FMO01217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:53 Download gff for
FMO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6720-RB | 96..797 | 24..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:50 Download gff for
FMO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD2-RA | 305..1006 | 24..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:51 Download gff for
FMO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc2-RB | 96..797 | 24..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:51 Download gff for
FMO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10766189..10766275 | 625..711 | 100 | <- | Minus |
| 2L | 10766391..10766991 | 24..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:50 Download gff for
FMO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10766189..10766275 | 625..711 | 100 | <- | Minus |
| arm_2L | 10766391..10766991 | 24..624 | 99 | | Minus |
