FMO01218.5prime Sequence
551 bp (142 high quality bases) assembled on 2008-03-12
> FMO01218.5prime
ATAATACAAAGTTATCAATCCACATGGGTAACGAGACCTCCCTGCCCATG
GGCCTGTGTTCCAACTTCGATGCGGACGAGATCCGTAAGCTGGGCAAGCG
ATTCCGCAAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGT
TCATGTCGCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATC
GATATCTTCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTAT
CCCGGGAGTGTCGCACTTTAGCGTGCGCGGGGATAAGCTGTCCAAGCTGC
GATTCGCCTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAAC
GGGGAACTCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGA
CACACAGCTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAACG
ACCAGGATGGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAAT
ACCGATATTCACAAGAAAATGGTTGTCGATGTTGCAAGCTTTCTAGACCA
T
FMO01218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanB-RB | 1148 | CG4209-RB | 103..613 | 23..533 | 2435 | 98.4 | Plus |
| CanB-RA | 1214 | CG4209-RA | 169..679 | 23..533 | 2435 | 98.4 | Plus |
| CanB2-RB | 2061 | CG11217-RB | 257..765 | 24..532 | 1285 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5333404..5333914 | 23..533 | 2435 | 98.4 | Plus |
| 2R | 25286936 | 2R | 7787234..7787533 | 67..366 | 765 | 83.7 | Plus |
| 2R | 25286936 | 2R | 7787597..7787757 | 372..532 | 460 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:04 has no hits.
FMO01218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:56 Download gff for
FMO01218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4209-RA | 162..682 | 20..541 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:43 Download gff for
FMO01218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB-RA | 165..685 | 20..541 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:24 Download gff for
FMO01218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB-RA | 165..685 | 20..541 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:24 Download gff for
FMO01218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5333400..5333920 | 20..541 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:43 Download gff for
FMO01218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5227433..5227953 | 20..541 | 97 | | Plus |
