FMO01219.5prime Sequence
1170 bp (971 high quality bases) assembled on 2008-03-12
> FMO01219.5prime
TTAATACGAAGTTATCAGTCGACATGTCTACCAATCAGCAGCCGCAGGCG
AATCCTTCGGCGGCCGTTGCCGCACCCGCCGCCTCCTCGGAATACCTGAA
ACGCACCTGCCTCATCTGCGGCTGCCACACCAACCAGACGATCAATATCT
ACGAGCCCCGCTCCGGACCCAATATCGTTCAGCTAATCCAGGCGAAATTC
AAGTTTCAGCCCCTGAACGAGGACAAATTCCTCTGCTTTAGCTGCAACAA
CTGGCTGATCAACTGGCACTCCCTGCAGGCGGTCAACAGCAATGAGGCCG
AAAGCCAGAGCCAAAGTCCCTCGCACATGGGCAACAGTGTGCTGCAGCAG
GAAAGGACGAAGCTCCGTCCGGTGGCGATGGTTCGACCCACGGTGCGAGT
GCAGCCCCAATCGCAGCCCCAACTGCAGCCCCAAGTTCCAATTAATCCCA
CACCCGCACCCATAGTCTATTCGAAGCGAAGAGCCAGCAGACGCAGTGCC
TCCGTCAGCCGGATGAGCCGAGTGCTGCGCCAGTGTTGTGTGGAGAGTCT
GCGGCGGAGTCCCAAGAAGCGCAATCAGCAGTCGGTGTTCGTCTGTCTTA
GGCCGCAGGGCCAGAAGAGGAGCAATGCGATCTGCAAGGTGGAGTGTGTG
GCGCCGCGCCGGAAACCAGTGGAGCGACTGGTTAAGGATGTGGCAGCTAC
AGCTACACCCACACCAGTGCTCAATACACAATCCACGCCCACTTACCAAA
GATTCCCGCAGCCCAGTGTGGATGGCAAGTAGTGGCCATGTTCCGTCGAC
TGGGAAACACACTCAGTCGGGAAGAACTCGCTGCATATTCAGCAGAATCA
AACCCTCGCCTGCTCGAAACTCCCGCAGATCATGAGTCCGCTCAAAGAGC
GCCGCGCTGGACGCGGGACCTCGATGATGATGAGATACTGCTGGAATTCG
ATACGCCATATCCGAAGTTCTGCCAACTGCCGCTTATCAGTACCACGAGG
AGAACAGAAAACAGCAGCACAGATGACTGACTGAGAGAGAAATGAATGCC
ACGACTGAATGTCAGAGGCGAGGCTCACTGACCTAACCCAAACAGAACGC
CCAATTCCACAAGTATCATCCTGCTGAATACAATGGCTTAAATACTCTGT
GTCCAGACTTTCAGAAGACA
FMO01219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-RA | 1839 | CG10108-RA | 245..1246 | 24..1017 | 4665 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14427971..14428750 | 981..204 | 3645 | 99 | Minus |
| 2R | 25286936 | 2R | 14431908..14432093 | 209..24 | 915 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:29:16 has no hits.
FMO01219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:57 Download gff for
FMO01219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10108-RA | 239..1249 | 16..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:27 Download gff for
FMO01219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1251 | 16..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:14 Download gff for
FMO01219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1251 | 16..1021 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:14 Download gff for
FMO01219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14427924..14428744 | 210..1021 | 97 | <- | Minus |
| 2R | 14431908..14432097 | 16..209 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:27 Download gff for
FMO01219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10315429..10316249 | 210..1021 | 97 | <- | Minus |
| arm_2R | 10319413..10319602 | 16..209 | 97 | | Minus |
