FMO01220.5prime Sequence
1163 bp (957 high quality bases) assembled on 2008-03-12
> FMO01220.5prime
ATAATACGAAGTTATCAGTCGACATGGAGCCTTATGATGTCCTCGTCAAC
CAGCCCGTCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGC
TGGTGAGCACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCA
AGCATGTCCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGA
CCCAAGGCGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGA
GCACGGCATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACA
TTTACAGCAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTG
CTGACCGAGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGA
GTTCTTCTTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGG
CGGTGCTCAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGAC
TCCGGCGACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCAT
GCCTCACAGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCT
ACCTGAAGACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCC
GAATTTGAGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCAC
CAATCCGCAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGC
TGCCCGACGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGCGCCGG
AGTGCTCTTCCGGCCCGATCTGCTGGGCGAGGAATGTGAGGGCATTCACG
ACGTTCTGATGTACTCCATCGAGAAGTCAGATATGGATCTCAGGAAATGC
TCTACCAGACATCGTGCTGTCCGGCGGATCACGCTCTTCAAGGATTCGCG
ACGTCTGTGTCGAACTGAAGAAACACTCGGCTAGATCTCAGATCAGATCG
CTGCGCCGCAGAACGTCTGTACTCCCATGATGGGCGATCGATTAGCCTCG
CTCGATACTTCAGAATGTGATCTCCGACGAATCAGAGGAGACGAGCCGGA
CGAAGACCTTGCAGCTTCGAACATTCTTGGCGCGCCAGTAATGGCTATTC
CAAACTAACAATC
FMO01220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1469 | CG6174-RA | 80..1136 | 24..1060 | 4790 | 98 | Plus |
CG31347-RA | 865 | CG31347-RA | 728..776 | 72..24 | 230 | 98 | Minus |
Act87E-RC | 1853 | CG18290-RC | 379..652 | 333..606 | 190 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12693215..12693697 | 464..941 | 2165 | 99 | Plus |
3R | 32079331 | 3R | 12692770..12692945 | 137..312 | 880 | 100 | Plus |
3R | 32079331 | 3R | 12693004..12693155 | 312..463 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12692643..12692707 | 72..136 | 325 | 100 | Plus |
3R | 32079331 | 3R | 12691822..12691870 | 24..72 | 230 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:29 has no hits.
FMO01220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:59 Download gff for
FMO01220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6174-RA | 81..1162 | 16..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:45 Download gff for
FMO01220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 74..1155 | 16..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:38 Download gff for
FMO01220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 74..1155 | 16..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:38 Download gff for
FMO01220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12693004..12693155 | 312..463 | 100 | -> | Plus |
3R | 12691816..12691869 | 16..71 | 91 | -> | Plus |
3R | 12692643..12692707 | 72..136 | 100 | -> | Plus |
3R | 12692770..12692944 | 137..311 | 100 | -> | Plus |
3R | 12693215..12693761 | 464..996 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:45 Download gff for
FMO01220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8517538..8517591 | 16..71 | 91 | -> | Plus |
arm_3R | 8518365..8518429 | 72..136 | 100 | -> | Plus |
arm_3R | 8518492..8518666 | 137..311 | 100 | -> | Plus |
arm_3R | 8518726..8518877 | 312..463 | 100 | -> | Plus |
arm_3R | 8518937..8519483 | 464..996 | 97 | -> | Plus |