Clone FMO01220 Report

Search the DGRC for FMO01220

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptArp87C-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01220.5prime Sequence

1163 bp (957 high quality bases) assembled on 2008-03-12

> FMO01220.5prime
ATAATACGAAGTTATCAGTCGACATGGAGCCTTATGATGTCCTCGTCAAC
CAGCCCGTCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGC
TGGTGAGCACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCA
AGCATGTCCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGA
CCCAAGGCGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGA
GCACGGCATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACA
TTTACAGCAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTG
CTGACCGAGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGA
GTTCTTCTTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGG
CGGTGCTCAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGAC
TCCGGCGACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCAT
GCCTCACAGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCT
ACCTGAAGACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCC
GAATTTGAGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCAC
CAATCCGCAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGC
TGCCCGACGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGCGCCGG
AGTGCTCTTCCGGCCCGATCTGCTGGGCGAGGAATGTGAGGGCATTCACG
ACGTTCTGATGTACTCCATCGAGAAGTCAGATATGGATCTCAGGAAATGC
TCTACCAGACATCGTGCTGTCCGGCGGATCACGCTCTTCAAGGATTCGCG
ACGTCTGTGTCGAACTGAAGAAACACTCGGCTAGATCTCAGATCAGATCG
CTGCGCCGCAGAACGTCTGTACTCCCATGATGGGCGATCGATTAGCCTCG
CTCGATACTTCAGAATGTGATCTCCGACGAATCAGAGGAGACGAGCCGGA
CGAAGACCTTGCAGCTTCGAACATTCTTGGCGCGCCAGTAATGGCTATTC
CAAACTAACAATC

FMO01220.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1469 CG6174-RA 80..1136 24..1060 4790 98 Plus
CG31347-RA 865 CG31347-RA 728..776 72..24 230 98 Minus
Act87E-RC 1853 CG18290-RC 379..652 333..606 190 72.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12693215..12693697 464..941 2165 99 Plus
3R 32079331 3R 12692770..12692945 137..312 880 100 Plus
3R 32079331 3R 12693004..12693155 312..463 760 100 Plus
3R 32079331 3R 12692643..12692707 72..136 325 100 Plus
3R 32079331 3R 12691822..12691870 24..72 230 98 Plus
Blast to na_te.dros performed on 2014-11-28 20:25:29 has no hits.

FMO01220.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:59 Download gff for FMO01220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6174-RA 81..1162 16..1074 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:45 Download gff for FMO01220.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 74..1155 16..1074 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:38 Download gff for FMO01220.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 74..1155 16..1074 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:38 Download gff for FMO01220.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12693004..12693155 312..463 100 -> Plus
3R 12691816..12691869 16..71 91 -> Plus
3R 12692643..12692707 72..136 100 -> Plus
3R 12692770..12692944 137..311 100 -> Plus
3R 12693215..12693761 464..996 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:45 Download gff for FMO01220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8517538..8517591 16..71 91 -> Plus
arm_3R 8518365..8518429 72..136 100 -> Plus
arm_3R 8518492..8518666 137..311 100 -> Plus
arm_3R 8518726..8518877 312..463 100 -> Plus
arm_3R 8518937..8519483 464..996 97 -> Plus