FMO01221.5prime Sequence
446 bp (446 high quality bases) assembled on 2008-03-12
> FMO01221.5prime
ATTATACCAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGC
TTCAAGGAGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCC
CATCTACATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGT
GTCCGGACTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAAC
CACGCGCCGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGA
ATCCTGGATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGG
AAGGCATACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGG
GATCAGCTGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGA
TCCGAAGAAGTCCAATTTTGTCGCCCAAGCAAGCTTTCTAGACCAT
FMO01221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3939-RB | 747 | CG3939-RB | 313..717 | 24..428 | 2025 | 100 | Plus |
| CG3939-RA | 931 | CG3939-RA | 497..901 | 24..428 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3175933..3176193 | 168..428 | 1305 | 100 | Plus |
| X | 23542271 | X | 3175514..3175658 | 24..168 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:12 has no hits.
FMO01221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:01 Download gff for
FMO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 396..803 | 24..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:18 Download gff for
FMO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 497..904 | 24..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:19 Download gff for
FMO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 497..904 | 24..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:19 Download gff for
FMO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3175514..3175658 | 24..168 | 100 | -> | Plus |
| X | 3175934..3176196 | 169..432 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:18 Download gff for
FMO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3069547..3069691 | 24..168 | 100 | -> | Plus |
| arm_X | 3069967..3070229 | 169..432 | 99 | | Plus |
