FMO01223.5prime Sequence
696 bp (696 high quality bases) assembled on 2008-03-12
> FMO01223.5prime
ATACTACCCAACTTATCAGTCGACATGCCGATACTATATAGTGTGATATC
GCGGGGCACCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTG
CCGAAGTGACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAG
ATGACCTACACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAA
ACTGGTCTACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCT
TCCTCTTCTTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTA
CAGGTGGCCACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGAT
CCTGGCCCAGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCA
TTTCGCGAGTACATGGTCAGATTGACGAGCTTATTTACATTATGGTTAAG
AATATTGACAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAA
CAAGACCGAAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCC
GAAATTTGGCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTG
GTGGGTCTGGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTG
TGGTGGCCTCGCTTGGCAGTCCTGTGTTGCAAGCTTTCTAGACCAT
FMO01223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 1148 | CG1599-RC | 377..1031 | 24..678 | 3230 | 99.5 | Plus |
Vamp7-RA | 1090 | CG1599-RA | 319..973 | 24..678 | 3230 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9841540..9841768 | 457..229 | 1100 | 98.7 | Minus |
2R | 25286936 | 2R | 9841846..9842051 | 229..24 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 9841197..9841349 | 678..526 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9841408..9841476 | 525..457 | 345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 4526..4552 | 435..461 | 108 | 88.9 | Plus |
FMO01223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:50 Download gff for
FMO01223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-RA | 319..997 | 15..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:37 Download gff for
FMO01223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..986 | 15..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:57 Download gff for
FMO01223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..986 | 15..687 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:57 Download gff for
FMO01223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9841184..9841349 | 526..687 | 97 | <- | Minus |
2R | 9841408..9841475 | 458..525 | 100 | <- | Minus |
2R | 9841540..9841768 | 229..457 | 98 | <- | Minus |
2R | 9841847..9842055 | 19..228 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:37 Download gff for
FMO01223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5728689..5728854 | 526..687 | 97 | <- | Minus |
arm_2R | 5728913..5728980 | 458..525 | 100 | <- | Minus |
arm_2R | 5729045..5729273 | 229..457 | 98 | <- | Minus |
arm_2R | 5729352..5729560 | 19..228 | 98 | <- | Minus |