Clone FMO01223 Report

Search the DGRC for FMO01223

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:23
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1599-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01223.5prime Sequence

696 bp (696 high quality bases) assembled on 2008-03-12

> FMO01223.5prime
ATACTACCCAACTTATCAGTCGACATGCCGATACTATATAGTGTGATATC
GCGGGGCACCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTG
CCGAAGTGACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAG
ATGACCTACACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAA
ACTGGTCTACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCT
TCCTCTTCTTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTA
CAGGTGGCCACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGAT
CCTGGCCCAGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCA
TTTCGCGAGTACATGGTCAGATTGACGAGCTTATTTACATTATGGTTAAG
AATATTGACAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAA
CAAGACCGAAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCC
GAAATTTGGCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTG
GTGGGTCTGGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTG
TGGTGGCCTCGCTTGGCAGTCCTGTGTTGCAAGCTTTCTAGACCAT

FMO01223.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 1148 CG1599-RC 377..1031 24..678 3230 99.5 Plus
Vamp7-RA 1090 CG1599-RA 319..973 24..678 3230 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841540..9841768 457..229 1100 98.7 Minus
2R 25286936 2R 9841846..9842051 229..24 1030 100 Minus
2R 25286936 2R 9841197..9841349 678..526 765 100 Minus
2R 25286936 2R 9841408..9841476 525..457 345 100 Minus
Blast to na_te.dros performed 2014-11-28 22:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 4526..4552 435..461 108 88.9 Plus

FMO01223.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:50 Download gff for FMO01223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 319..997 15..687 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:37 Download gff for FMO01223.5prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..986 15..687 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:57 Download gff for FMO01223.5prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..986 15..687 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:57 Download gff for FMO01223.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9841184..9841349 526..687 97 <- Minus
2R 9841408..9841475 458..525 100 <- Minus
2R 9841540..9841768 229..457 98 <- Minus
2R 9841847..9842055 19..228 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:37 Download gff for FMO01223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5728689..5728854 526..687 97 <- Minus
arm_2R 5728913..5728980 458..525 100 <- Minus
arm_2R 5729045..5729273 229..457 98 <- Minus
arm_2R 5729352..5729560 19..228 98 <- Minus