FMO01224.5prime Sequence
494 bp (494 high quality bases) assembled on 2008-03-12
> FMO01224.5prime
AAAAAACCAAGTTATCAGTCGACATGGCCAAAAACACGTCCCGCAACGCG
TTCCGCAAGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGA
TGATGGGGTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGA
CGCTGCTGACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAG
AATGCCCCGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAA
CATCACGCTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGG
CCATCGACACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTAC
ATATATCGGGGATTCGAGATCTCCTCGGAGGGCTCCAGTGGCCACCTGCT
GCAGTGGCATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCC
GCGTGCTGTCCGACACAAATCGCGCCGCAAGCTTTCTAGACCAT
FMO01224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc5-RB | 1070 | CG9881-RB | 76..530 | 22..476 | 2245 | 99.6 | Plus |
| Arpc5-RA | 785 | CG9881-RA | 76..530 | 22..476 | 2245 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2580642..2580883 | 235..476 | 1195 | 99.6 | Plus |
| 2L | 23513712 | 2L | 2580367..2580582 | 22..237 | 1065 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:13 has no hits.
FMO01224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:25 Download gff for
FMO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9881-RA | 77..531 | 22..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:49 Download gff for
FMO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc5-RA | 76..530 | 22..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:06 Download gff for
FMO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc5-RA | 76..530 | 22..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:06 Download gff for
FMO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2580367..2580581 | 22..236 | 99 | -> | Plus |
| 2L | 2580644..2580883 | 237..476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:49 Download gff for
FMO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2580367..2580581 | 22..236 | 99 | -> | Plus |
| arm_2L | 2580644..2580883 | 237..476 | 99 | | Plus |
