FMO01226.5prime Sequence
1181 bp (972 high quality bases) assembled on 2008-03-12
> FMO01226.5prime
CAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCGGGGAGCCC
AATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCACGACGACT
CCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCCATTCGAGG
AGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGGCGGCGGTG
GTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGTTCCCTGGG
CGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGAGCTGCAGC
GCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACCGCCGCGAG
CAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCACCGCTGCC
GGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGAGGTGGAGA
TACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACATTTGGATT
TTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTAATTTTGCT
GTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTTCTACACGA
TGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGGCGTACAAG
GCATTCCGCAACGATTCGAGCTTCAACTTCATGGTCTTCTTCTTCATCTA
CTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTTCAACAAGA
TGGGCTACTGTGGCTTTATACGGCCATCGGGCAGTTCGATGGGCAAGCGT
CGGGTATTATCGTCGGCATTCTGCTGTTGAACGTGGCATTCTGTTTCACA
GCGGTGGCCGTGGCCATGTGCTGATGATACAAGATTCACTCGATCTACGC
AGCACAGGGGCAGTATGGCCAAGCCAGCGAGTTCACACGAGTTTCTGCGC
ACAGCACGTCAGGAAGCAGCCTCCTCGGCCGTTAATACGCATCAATTCGC
AGTTTAACAACAGCAGATACGCAAGCTTTAGACATTTCGTTGGCGCCGCG
GCCCAAGTTAGTGGTCTAATCATAATCCTAAATCCAAAATCTTAATCCAC
CTAGCCTAAGGAAATTCTTGTCATGACTATGTTGATCTCACAATAAAAGC
CGCGGCGACCAAGAGCTTCTGGACAACTCCT
FMO01226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scamp-RC | 2322 | CG9195-RC | 116..1145 | 8..1020 | 4740 | 98.3 | Plus |
| Scamp-RA | 2391 | CG9195-RA | 116..1145 | 8..1020 | 4740 | 98.3 | Plus |
| Scamp-RD | 2813 | CG9195-RD | 830..1567 | 300..1020 | 3280 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15447425..15447831 | 1020..631 | 1320 | 94.6 | Minus |
| X | 23542271 | X | 15449281..15449509 | 299..71 | 1145 | 100 | Minus |
| X | 23542271 | X | 15448379..15448583 | 501..297 | 1025 | 100 | Minus |
| X | 23542271 | X | 15447893..15448024 | 633..502 | 660 | 100 | Minus |
| X | 23542271 | X | 15449704..15449768 | 72..8 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:24:32 has no hits.
FMO01226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:07 Download gff for
FMO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9195-RA | 116..1160 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:42 Download gff for
FMO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 110..1154 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:17 Download gff for
FMO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 110..1154 | 1..1034 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:17 Download gff for
FMO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15447416..15447830 | 632..1034 | 94 | <- | Minus |
| X | 15447895..15448024 | 502..631 | 100 | <- | Minus |
| X | 15448379..15448580 | 300..501 | 100 | <- | Minus |
| X | 15449281..15449508 | 72..299 | 100 | <- | Minus |
| X | 15449705..15449773 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:42 Download gff for
FMO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15341449..15341863 | 632..1034 | 94 | <- | Minus |
| arm_X | 15341928..15342057 | 502..631 | 100 | <- | Minus |
| arm_X | 15342412..15342613 | 300..501 | 100 | <- | Minus |
| arm_X | 15343314..15343541 | 72..299 | 100 | <- | Minus |
| arm_X | 15343738..15343806 | 1..71 | 94 | | Minus |
