FMO01227.5prime Sequence
393 bp (393 high quality bases) assembled on 2008-03-12
> FMO01227.5prime
TATAAAACGAAGTTATCAGTCGACATGATAGCAATGGACGAGCCGCGCGG
CGACAAGATCTACGGCGGATGCGAGGGTCCGGACGCCATGTACGTGAAGC
TGATTTCCTCGGACGGCCACGAATTTGTCGTCAAACGCGAGCACGCTCTC
ACCTCCGGCACAATCCGGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGA
GAACGAGGCCAACGAGGTGCATTTCCGGGAGATACCATCCCACGTCCTAC
AAAAGGTCTGCATGTACTTCACCTATAAAGTGCGTTACACCAACAGTTCT
ACCGAAATACCCGAATTCCCGATCGCTCCGGAGATCGCATTAGAACTTTT
GATGGCGGCTAATTTCCTAGACTGCGCAAGCTTTCTAGACCAT
FMO01227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloC-RB | 654 | CG9291-RB | 148..498 | 25..375 | 1740 | 99.7 | Plus |
| EloC-RA | 576 | CG9291-RA | 70..420 | 25..375 | 1740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19445928..19446139 | 236..25 | 1045 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19445241..19445379 | 375..237 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:01 has no hits.
FMO01227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:09 Download gff for
FMO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9291-RB | 52..411 | 20..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:46 Download gff for
FMO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 70..425 | 25..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:50 Download gff for
FMO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloC-RA | 70..425 | 25..380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:50 Download gff for
FMO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19445236..19445379 | 237..380 | 98 | <- | Minus |
| 2R | 19445928..19446143 | 20..236 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:46 Download gff for
FMO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15332741..15332884 | 237..380 | 98 | <- | Minus |
| arm_2R | 15333433..15333648 | 20..236 | 98 | | Minus |
