FMO01228.5prime Sequence
552 bp (552 high quality bases) assembled on 2008-03-12
> FMO01228.5prime
ATGTACCAAACTTATCAGTCGACATGGGAAATGAAACATCACTGCCCATG
GAAATGTGTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCAAACG
TTTCCGGAAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGT
TCATGTCGCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATC
GACATTTTCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGTTCAT
CCAGGGCGTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGC
GCTTCGCCTTTCGCATCTATGACATGGACAACGATGGTTACATTTCCAAT
GGCGAACTGTTTCAGGTTTTAAAGATGATGGTAGGCAATAATCTGAAGGA
CACGCAACTGCAGCAGATTGTGGACAAGACTATTTTTATTCGCGGATAAG
GATGAGGATGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAA
CACGGACATTCACAAGAAGATGGTAGTCGATGTCGCAAGCTTTCTAGACC
AT
FMO01228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanB2-RB | 2061 | CG11217-RB | 257..766 | 24..534 | 2470 | 99 | Plus |
| CanB2-RA | 1143 | CG11217-RA | 257..766 | 24..534 | 2470 | 99 | Plus |
| CanB-RB | 1148 | CG4209-RB | 103..612 | 23..533 | 1405 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7787234..7787533 | 67..366 | 1500 | 100 | Plus |
| X | 23542271 | X | 5333404..5333913 | 23..533 | 1380 | 85.1 | Plus |
| 2R | 25286936 | 2R | 7787589..7787758 | 364..534 | 745 | 97.1 | Plus |
| 2R | 25286936 | 2R | 7786499..7786539 | 26..66 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:29:26 has no hits.
FMO01228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:11 Download gff for
FMO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11217-RA | 255..767 | 24..538 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:33 Download gff for
FMO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 24..538 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:18 Download gff for
FMO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 24..538 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:18 Download gff for
FMO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7787234..7787532 | 67..365 | 100 | -> | Plus |
| 2R | 7787591..7787761 | 366..538 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:33 Download gff for
FMO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3674739..3675037 | 67..365 | 100 | -> | Plus |
| arm_2R | 3675096..3675266 | 366..538 | 95 | | Plus |
