FMO01229.5prime Sequence
355 bp (156 high quality bases) assembled on 2008-03-12
> FMO01229.5prime
ATAAAAAACAATTATCAGTCGACATGGAGAACAACGAAGCCCTTTCCCCC
TCGGGATCCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGC
GAATGACAACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATG
CAGCCCAGAAGAAGCTGCAGCAGACCCTAGCCAAGGTGGACGAGGTGGTC
GGGATTATGCGTGTGAACGTGGAAAAAGGTCCTGGGAGCGGGAACCAAAA
CTATCGGAACTGGGGCAAGCGTGCGGATTCACCTGGAGCAGGGAACATTC
CCAGTTCAAGCAACAGGCCCGGCAACTTAAACCCAAGCAAGGGGGGGCCC
AAATT
FMO01229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syb-RC | 921 | CG12210-RC | 147..467 | 24..349 | 1190 | 92.7 | Plus |
| Syb-RB | 1139 | CG12210-RB | 147..467 | 24..349 | 1190 | 92.7 | Plus |
| Syb-RE | 814 | CG12210-RE | 156..360 | 140..349 | 640 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10250940..10251213 | 349..71 | 845 | 91 | Minus |
| 2R | 25286936 | 2R | 10251928..10251974 | 70..24 | 205 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:21 has no hits.
FMO01229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:12 Download gff for
FMO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12210-RC | 134..450 | 19..340 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:47 Download gff for
FMO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 142..458 | 19..340 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:32 Download gff for
FMO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 142..458 | 19..340 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:32 Download gff for
FMO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10250949..10251213 | 71..340 | 92 | <- | Minus |
| 2R | 10251928..10251979 | 19..70 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:47 Download gff for
FMO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6138454..6138718 | 71..340 | 92 | <- | Minus |
| arm_2R | 6139433..6139484 | 19..70 | 92 | | Minus |
