FMO01232.5prime Sequence
1204 bp (976 high quality bases) assembled on 2008-03-12
> FMO01232.5prime
CAGTCGACATGGAATTTTTACACGAATCCGTTGCACTGGGCGTGGATCTG
CTAATACTTGGCCTGTGTGCGCGCGAGTACGTGCACTACAAGCGAACTGC
CAAGGTGCTGAAGGCGGCACCACAATACAACATCGATGGAGACCTAAAAT
CGGTGGTGGAGCGGCAGCGCGACAAGAAGATACCATATGCGGTAATCCGG
GGCACAGTGACGCCCATCGGGGTGCCACTGAGGAGCTCCCTGGTGCCCAG
TGTGAGTGGAGTGCTGCAGATTGTGAAGCTGCATGAGCACAGGGTAACGC
GCGGATTCGCCGGCTTCTGGACGGAACAACACAAGTTGCTGCACGAATCC
GCCAACGAGATGCCCTTCGAGTTGCGTAACCAGAGCCATGGTGTGGAGAT
TGTGGACGCCTTGAGTGCCGCCGTCTTGGACGTGGACGTGGTCTACGACA
ACTACGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTGGTTTCTTC
TCTGGCGTCCGTCAGAGGGGATTGCAAACGACGGAGGAGGTGCTCAGAGA
AGGCAGCTTCCTGACCGCTATTGGTGAACTGGAGTTGGATGGCGATACTC
TGCGCATGCAGCCCTCCAATGAGGGACCGCTCTTCCTGACCACTGCCACC
AAGTCCACGCTTATTAAGCGGTTCGAAGATGCCAAGACAACGACGATACT
CAAGCTGGTTGTGTGCAGCACCATCTCTGCCATCCTGGTTGCCTTCATTG
CCAAGAAACTCTACCGAAAACGAAAGCAGGAGCGGGAGGAGGCCAAAATT
CGCGAACGCCTGCATACGGAGCGTCGGGAGCGGAGGGCGAGGAGTCGTCC
TCACACTCTGTCCCAGGATCAACTCTGCGTGGTGTGCTCCACCAATCCCA
AGGAGATTATCCTACTGCCATGTGGTCATGTGTGTCTCTGCGAGGACTGT
GCTCAGAAATCTCCGTCACTGCTCGTGGGTCGGGTAGCATCGTCTCAGGC
AGCCGCCTTCATCGCCGCAAGCTTTCTAGACCATTCGTTTGGGCGCGCCG
GCCCAGGTAGTGGTCTAATACTAATCTAATACTAAATCTAAATCCCACTA
GCCTAAGGGAGATTCTGGGTCTGAGACTATGGCCTGGATTCTCCCATAAA
AGGCCGGGGCAACCGAGGTTCGACAAATCGAAAGAGATTCGAGAGACCAT
ACTG
FMO01232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mul1-RB | 1656 | CG1134-RB | 79..1092 | 9..1016 | 4870 | 99 | Plus |
| Mul1-RA | 1213 | CG1134-RA | 79..1092 | 9..1016 | 4870 | 99 | Plus |
| CG11594-RA | 2895 | CG11594-RA | 2658..2776 | 1016..904 | 410 | 92.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4021702..4022287 | 112..697 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 4022346..4022553 | 698..905 | 1025 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4021535..4021640 | 9..114 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 4022819..4022937 | 904..1016 | 290 | 90.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:07 has no hits.
FMO01232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:18 Download gff for
FMO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1134-RA | 91..1110 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:49 Download gff for
FMO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mul1-RA | 73..1092 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:54 Download gff for
FMO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mul1-RA | 73..1092 | 1..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:54 Download gff for
FMO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4021529..4021639 | 1..113 | 96 | -> | Plus |
| 3L | 4021704..4022287 | 114..697 | 100 | -> | Plus |
| 3L | 4022346..4022553 | 698..905 | 99 | -> | Plus |
| 3L | 4022821..4022936 | 906..1015 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:49 Download gff for
FMO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4021529..4021639 | 1..113 | 96 | -> | Plus |
| arm_3L | 4021704..4022287 | 114..697 | 100 | -> | Plus |
| arm_3L | 4022346..4022553 | 698..905 | 99 | -> | Plus |
| arm_3L | 4022821..4022936 | 906..1015 | 92 | -> | Plus |
