FMO01235.5prime Sequence
406 bp (406 high quality bases) assembled on 2008-03-12
> FMO01235.5prime
ATAAACAAAGTTATCAGTCGACATGGCCGAGGAGATAGAGGTTGAGGAGA
CGGAGGACTTCCACGACATGGACTTCAATGACGAAGAGCCATCCTGTAGT
GGAGGAGCTGTCCAGGCCAGGACGGAGCGCTTTGTGGTGAAGAAATGGGT
TGCGCACGCCATGTGGGGATGGGACGTAGCAGTGGACAACTGTGCCATCT
GCCGTAACCACATCATGAACCTGTGCATCGAGTGCCAGGCGGACCCGAAT
GCAAACCAAGACGAGTGCACTGTGGCTTGGGGCGAGTGCAACCACGCATT
CCATTACCACTGCATCGCGCGCTGGTTGAAAACGCGCCTGGTCTGTCCGC
TGGACAACAAGGAGTGGGTCTACCAGAAGTACGGCCGCGCAAGCTTTCTA
GACCAT
FMO01235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 2674..3040 | 388..22 | 1835 | 100 | Minus |
| Cdc5-RA | 3346 | CG6905-RA | 2801..3167 | 388..22 | 1835 | 100 | Minus |
| Roc1b-RA | 506 | CG16988-RA | 50..416 | 22..388 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 358030..358396 | 22..388 | 1835 | 100 | Plus |
| X | 23542271 | X | 647711..647918 | 182..386 | 405 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:24 has no hits.
FMO01235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:05 Download gff for
FMO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16988-RA | 44..420 | 14..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:57 Download gff for
FMO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..420 | 14..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:43 Download gff for
FMO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..420 | 14..394 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:43 Download gff for
FMO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 358024..358400 | 14..394 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:57 Download gff for
FMO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 358024..358400 | 14..394 | 98 | | Plus |
