FMO01239.5prime Sequence
1216 bp (1015 high quality bases) assembled on 2008-03-12
> FMO01239.5prime
ATTAAACGAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTC
AGGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGC
AGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCC
CCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAAC
GAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCAT
CCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCT
ATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCC
CAGCTAAAAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAA
TACTCTGCCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATG
AGCAGCTGGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAG
CTGCCCACCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATA
CGATGTGCGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTA
TAGGAGCTGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGT
TTGATCAATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGA
CATGGGCTTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATG
GCATTTACTCGACCACGATGGAGTGGCTAATACAGAACCAAAACGAGGAA
AATCCACAGGAACCGCCGGGCATGAATATGCAGCACAGTCTATCTTCCAT
CTCACCCTCCACGATTGTCACCAATAATGAAACCATTGAAAACACTGCTG
CCTTGATTGAGATTGTACGATCTACAGCCCCGGGATTCCCCTCCCAGCGA
TGAGATTGTAGAATCGCTTACAGAATGGGCTTCGAGGAGACGGCAGTGCT
TGCGGCGCTGAAGAAACTGGCAACAACAAGCGTTCGCGTGGATGTTGTGC
GACAATCGATCGGTAGCGTTATGACTGCGTGAAAGCTGGCGCCGAATCGC
CCATCTAAGGATCTGGAATGCCCAAGTCGAAGACCTACCACTCAAGACTT
TTGGCATTCCGATCTGAAGCACTGGATCCGTGGGTGACAGACAGCTCGTC
ATAGATTCTCTTCAGG
FMO01239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..1199 | 24..1105 | 5030 | 98.1 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1610 | 41..1105 | 4945 | 98.1 | Plus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1598 | 53..1105 | 4885 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671359..19671850 | 51..542 | 2430 | 99.6 | Plus |
2R | 25286936 | 2R | 19671906..19672242 | 543..879 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 19672294..19672449 | 879..1030 | 535 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:29:35 has no hits.
FMO01239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:24 Download gff for
FMO01239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-RB | 105..1203 | 24..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:41 Download gff for
FMO01239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1203 | 24..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:23 Download gff for
FMO01239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1203 | 24..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:23 Download gff for
FMO01239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19671267..19671295 | 24..52 | 100 | -> | Plus |
2R | 19671361..19671850 | 53..542 | 99 | -> | Plus |
2R | 19671906..19672241 | 543..878 | 100 | -> | Plus |
2R | 19672294..19672537 | 879..1108 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:41 Download gff for
FMO01239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558772..15558800 | 24..52 | 100 | -> | Plus |
arm_2R | 15558866..15559355 | 53..542 | 99 | -> | Plus |
arm_2R | 15559411..15559746 | 543..878 | 100 | -> | Plus |
arm_2R | 15559799..15560042 | 879..1108 | 91 | == | Plus |