Clone FMO01239 Report

Search the DGRC for FMO01239

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:39
Vector:pMK33-CFH-BD
Associated Gene/Transcriptisopeptidase-T-3-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01239.5prime Sequence

1216 bp (1015 high quality bases) assembled on 2008-03-12

> FMO01239.5prime
ATTAAACGAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTC
AGGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGC
AGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCC
CCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAAC
GAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCAT
CCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCT
ATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCC
CAGCTAAAAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAA
TACTCTGCCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATG
AGCAGCTGGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAG
CTGCCCACCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATA
CGATGTGCGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTA
TAGGAGCTGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGT
TTGATCAATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGA
CATGGGCTTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATG
GCATTTACTCGACCACGATGGAGTGGCTAATACAGAACCAAAACGAGGAA
AATCCACAGGAACCGCCGGGCATGAATATGCAGCACAGTCTATCTTCCAT
CTCACCCTCCACGATTGTCACCAATAATGAAACCATTGAAAACACTGCTG
CCTTGATTGAGATTGTACGATCTACAGCCCCGGGATTCCCCTCCCAGCGA
TGAGATTGTAGAATCGCTTACAGAATGGGCTTCGAGGAGACGGCAGTGCT
TGCGGCGCTGAAGAAACTGGCAACAACAAGCGTTCGCGTGGATGTTGTGC
GACAATCGATCGGTAGCGTTATGACTGCGTGAAAGCTGGCGCCGAATCGC
CCATCTAAGGATCTGGAATGCCCAAGTCGAAGACCTACCACTCAAGACTT
TTGGCATTCCGATCTGAAGCACTGGATCCGTGGGTGACAGACAGCTCGTC
ATAGATTCTCTTCAGG

FMO01239.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RB 1778 CG11025-RB 105..1199 24..1105 5030 98.1 Plus
isopeptidase-T-3-RC 2491 CG11025-RC 533..1610 41..1105 4945 98.1 Plus
isopeptidase-T-3-RA 2479 CG11025-RA 533..1598 53..1105 4885 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671359..19671850 51..542 2430 99.6 Plus
2R 25286936 2R 19671906..19672242 543..879 1685 100 Plus
2R 25286936 2R 19672294..19672449 879..1030 535 95.5 Plus
Blast to na_te.dros performed on 2014-11-28 21:29:35 has no hits.

FMO01239.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:24 Download gff for FMO01239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11025-RB 105..1203 24..1108 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:41 Download gff for FMO01239.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..1203 24..1108 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:23 Download gff for FMO01239.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..1203 24..1108 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:23 Download gff for FMO01239.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19671267..19671295 24..52 100 -> Plus
2R 19671361..19671850 53..542 99 -> Plus
2R 19671906..19672241 543..878 100 -> Plus
2R 19672294..19672537 879..1108 91 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:41 Download gff for FMO01239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15558772..15558800 24..52 100 -> Plus
arm_2R 15558866..15559355 53..542 99 -> Plus
arm_2R 15559411..15559746 543..878 100 -> Plus
arm_2R 15559799..15560042 879..1108 91 == Plus