FMO01240.5prime Sequence
913 bp (289 high quality bases) assembled on 2008-03-12
> FMO01240.5prime
ATCGAAGAAAACTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCG
CCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCG
TAACCATCGACACCGAGACTGTACAACAAAATTTATCCGAATGGAAAATA
AACATTAAAGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCT
ACTTTTCAAATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCT
TCATCGGCACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACAC
ATCTGCCCTATCCATTCTGACCGAGGACTGGTCCCCCGGCGCTGTCCCTT
GCAGTCCCGGGTGGCCTTACCATAACCTTCTCATGTTGGAGAAATTTGTC
CCCAAAAAAAAACCGTCCCGCCGGAACAACACGAAATACCAAAAAATTTT
GTTATTAAAAAATCCTAAAAAAAAAAAAATGGGGGGACCCCCAAAGAATT
CTGGGTTGAAACTTTCTAAACCCTTTCTTTTGGGGGCCGGGGGCCCAAAA
AAAGGGGGCCAAACCCAAATCTAAAACCCAAATCAAAACCCCACCTTACC
CTAAGGAAAACCCGGGGTTAAAAAAAAGGTGTGAACTCCCCCAAAAAAAA
AAACCCCCGGGGGCAACCAAATTTTTTTAAAAAACCCAAAGGGGGTTTGG
GGGGTTTTGGTGTTTTTAACAGGGGAGCTCAGGGGGGTCTTATATTTTTT
CTCCGCCTCGGCCTCTTCTGAGGGGGGGGGGAATTAATAATTTCGCGCGC
GGGAGAGAGACCCACACAAAGAGAGAAAAAACAAATCCCCCCGGCGCCTC
CTCCCTCGCGTGTCTTTATAATATGTCTCCACAAAAAAAAATAAAAAAGT
ATTCCTGTGTGCT
FMO01240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7220-RC | 1672 | CG7220-RC | 208..616 | 25..446 | 1570 | 93.4 | Plus |
| CG7220-RA | 1771 | CG7220-RA | 307..715 | 25..446 | 1570 | 93.4 | Plus |
| CG7220-RD | 1742 | CG7220-RD | 278..686 | 25..446 | 1570 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10736893..10736997 | 141..245 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 10736655..10736748 | 47..140 | 440 | 97.9 | Plus |
| 2R | 25286936 | 2R | 10737058..10737161 | 242..347 | 430 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:13 has no hits.
FMO01240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:26 Download gff for
FMO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RC | 189..505 | 18..336 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:53 Download gff for
FMO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 306..622 | 18..336 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:56 Download gff for
FMO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 272..588 | 18..336 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:56 Download gff for
FMO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10737060..10737151 | 244..336 | 98 | == | Plus |
| 2R | 10736657..10736748 | 49..140 | 97 | -> | Plus |
| 2R | 10736893..10736995 | 141..243 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:53 Download gff for
FMO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6624162..6624253 | 49..140 | 97 | -> | Plus |
| arm_2R | 6624398..6624500 | 141..243 | 100 | -> | Plus |
| arm_2R | 6624565..6624656 | 244..336 | 98 | == | Plus |
