FMO01243.5prime Sequence
1201 bp (855 high quality bases) assembled on 2008-03-12
> FMO01243.5prime
ATACCAAAGTTATCAGTCGACATGAGTGATACGCGTGAGCAGATTCTGGA
GCAAATCAAAGTGCAAGGCGATCTCGTCCGTCAATTGAAAGCAGCGAAGG
AGTCGAAGGAGAAGATCGATGAGGAGGTCGCCCGCCTACTGGCCCTAAAG
GCCACTCTTGGCGGAGATGCCGCCCCCACCAATCAGAAGTTCACGCTAAA
GACGCCCAAAGGCACACGGGACTATGGTCCTCAGCAGATGACCCTGCGCC
AGGGCGTCCTGGACAAGATCGTCCAGGTGTTCAAGCGCCACGGCGGCGAA
GCCATCGATACGCCCGTGTTCGAGCTGAAGGAAGTGCTGACGGGCAAGTA
CGGCGAGGACTCAAAGCTGTTTTACGACTTGAAGGATCAGGGCGGTGAGA
TCCTATCGATGAGGTATGACTTGACCGTGCCGCTTGTTCGTTACCTGGCG
ATGAACAAGATCTCGAGCATCAAGCGCTACCACATCGCCAAGGTCTATCG
ACGCGACAATCCGGCAATGACCAAGGGTCGCTATCGGGAGTTCTACCAAT
GTGACTTCGACATCGCCGGCACCTACGATCCCATGCTGCCGGATGCCGAG
TGCGTCAAGATTGTGTCGGAGATACTGGACACGCTGGACATTGGAGACTA
TGTGATAAAGCTAAATCACCGCCAGCTTTTGGACGGCATGTTCCAGGCGT
GCGGAGTGCCGGCGGATAGCTTCCGCACCATCTGCTCAGCGGTGGATAAG
TTGGATAAGTCGCCCTGGGCGGATGTGCGCAAGAGATGGTGGATGAGAAC
GGTCTGGACGAGGCAGCAGCGGATCGAATTGCCGAGTACGTGCGACTGAG
CGGCGGTGCCGAGCTGGTGAACAACTGCTGGCCCACCGGAAGCTCAGGCT
GTGCTAATGCCGTAAAGGGTCTGGAGGGCATGAGCAGCTCTTAGTACTGT
TCATATTCGGTCTGGAATAGCGGAGTAGCTTCGATTGGAGTCTGGCCCGT
GACTGGACTACTACCCGGTGTAATCTACGAGGTGTGCTCAGGAAGTCCGC
CACGTGCATCTCCGGCAAAACTTCCAGCGAACGGAAGCAGTGCACTACCG
TCACGTGTGAATCGGCTGGAGCGGTCCTACGACACACCTTGGGCATTCCA
ATCGCGCGAGGCTTGCCTGTGGGGCGTGTGTCTAATTGGCGTGGAAAGGC
C
FMO01243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-his-RA | 1978 | CG6335-RA | 163..1251 | 22..1090 | 4655 | 96.4 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 1138..2135 | 113..1090 | 4200 | 96.1 | Plus |
| Aats-his-RD | 2104 | CG6335-RD | 380..1377 | 113..1090 | 4200 | 96.1 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 163..255 | 22..114 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18518823..18519253 | 329..759 | 2095 | 99.1 | Plus |
| X | 23542271 | X | 18517809..18518027 | 113..331 | 1095 | 100 | Plus |
| X | 23542271 | X | 18519313..18519606 | 758..1040 | 730 | 91.2 | Plus |
| X | 23542271 | X | 18515590..18515682 | 22..114 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:28 has no hits.
FMO01243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:29 Download gff for
FMO01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6335-RA | 192..1261 | 22..1074 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:49 Download gff for
FMO01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1232 | 22..1074 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:33 Download gff for
FMO01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1232 | 22..1074 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:33 Download gff for
FMO01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18517811..18518026 | 115..330 | 100 | -> | Plus |
| X | 18515590..18515682 | 22..114 | 100 | -> | Plus |
| X | 18518825..18519253 | 331..759 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:49 Download gff for
FMO01243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18409623..18409715 | 22..114 | 100 | -> | Plus |
| arm_X | 18411844..18412059 | 115..330 | 100 | -> | Plus |
| arm_X | 18412858..18413286 | 331..759 | 99 | -> | Plus |
