FMO01244.5prime Sequence
1245 bp (1000 high quality bases) assembled on 2008-03-12
> FMO01244.5prime
CAGTCGACATGGATGTGGATAATGGCGAGGGGCAGGTGCAGGTGCACCTG
AAGACCAAGCAGGAGCATTATGCCGTGCCTGATGTGCCGTACGCCATCGA
TGGCACCGTCACCACCGTGGAACTAAACACATTCGTGAACGCACTGTTGC
GTCAAAAAGATGGCTCTTCCGACACTGACTTCGACTTCCTGGTGTTCGAT
GAGTACCTGCGCGGCCGGCTGTGCGATCACCTGCGCGAGAAAGCCATCAG
TTTCGAGGACGCCATCGAGATCGAGTATGTGGAGCGGTTCCCGGCGCCAG
AGCCACAGGATTGCCTGCTGCACGACGACTGGGTGTCCGCGGTGAAGGCT
AGAGGAAAGTGGATCCTCTCTGGGTGCTACGACAACACCCTGAATTTGTG
GACCAACAAGGGCAAGCACATTCTCACTATTTCTGGTCACACGGCGCCCA
TCAAGGCGGTGGACTGGATATCGCTGGACGAGGAGACGGGACGTTTTGTG
TCCACATCGCAGGATCAGACCGCCATGCTGTGGCAGTGGAACGTGGGCTC
CAACTCGGTGGAATGTGTCTCCGTGTGCAAGGGCCACGAGCGAGGCGTCG
ACAGTGTCAGCGTGAGTCCGGATGGTCTGAGATTTGCCACGGGCTCTTGG
GACACGATGTTGAAGGTGTGGTCAGCAGAGCTGGACGATGCAGTCGAGGG
CAGCTCAAAGCGGATGAAAGAGAGCGGTGTGAGAACCCCCAAAATTACGC
TGCAGGGACATCGTGAGAGCGTATCAGCCGTGCAGTGGATGGATGCTACC
ACTCTGCTAACTGGCAGCTGGGATCACACACTCAAGTGTGGGATCTGAGT
CTTGAGGGCATCAAGACCGAATATCCACCAACAAGTCCATATTCGATGCG
AGCTACTCAAAGCTGAATCGGCTGATACTGACTGCTTCGGCGGACAAGAA
TCTGCGGCTTTTATGATCCTAGGACAACCAGGGATCATGGTAAGGAATAC
CTATCTGGGAACCATGCCTGGGTGCCGACCGTCATGTGGGTCCCCCACGA
AGAGTTCTTATTTTGTCCCCGGCCTTATGGAAAACCAAAAACAGAGCGTG
GGAAATGCAGAGAGTTCCAGGCTCACTGTATCGAACTCCCGGGTCACGGG
AAAGAGTCTGGGAACTCCCATGTTCATCAGACATTGTATCTGTGGGTTGA
CACACGTGGCCAATCCAATCTCGAGAAGGCTATCGCGGAATGTCG
FMO01244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6724-RA | 1535 | CG6724-RA | 220..1361 | 9..1149 | 4920 | 96.3 | Plus |
| CG6724-RB | 1529 | CG6724-RB | 220..1355 | 9..1149 | 4820 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10768948..10769613 | 734..69 | 3225 | 98.9 | Minus |
| 2L | 23513712 | 2L | 10768647..10768890 | 977..735 | 1060 | 98.4 | Minus |
| 2L | 23513712 | 2L | 10769675..10769733 | 67..9 | 280 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10768515..10768567 | 1039..988 | 185 | 94.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:45 has no hits.
FMO01244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:31 Download gff for
FMO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 226..1266 | 1..1039 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:08 Download gff for
FMO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1254 | 1..1039 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:54 Download gff for
FMO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1254 | 1..1039 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:54 Download gff for
FMO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10768644..10768890 | 735..979 | 97 | <- | Minus |
| 2L | 10768515..10768576 | 980..1039 | 93 | <- | Minus |
| 2L | 10768948..10769614 | 68..734 | 98 | <- | Minus |
| 2L | 10769675..10769739 | 1..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:08 Download gff for
FMO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10768644..10768890 | 735..979 | 97 | <- | Minus |
| arm_2L | 10768515..10768576 | 980..1039 | 93 | <- | Minus |
| arm_2L | 10768948..10769614 | 68..734 | 98 | <- | Minus |
| arm_2L | 10769675..10769739 | 1..67 | 94 | | Minus |
