FMO01245.5prime Sequence
1179 bp (972 high quality bases) assembled on 2008-03-12
> FMO01245.5prime
CAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCAGCCAGCGG
AGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGGGAGAAGGA
AAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTCCGACTCGG
CGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGATCGCAGAAC
AACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCCATGGCCAG
CTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAGGCGGGACA
AGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGGGCCAAGGG
CTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGACGACGGCGG
AACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTGTCCGGAAC
CCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGAAGAAATGG
CTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTACAAGGCCTG
CTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTCCAGGCGCG
ATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTCTAGTCCGC
GACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGGATTGTGAA
CGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTGGCACTTCG
AGGAACTTAAGTACGAGTCCATTGTCGAGATGATCGAAGATATCTTGCAC
CGCTGCACCAACGACAACTTTGTGTGCTTTGTGAAGGTTCCCAACGAGAT
GCAGCACCGTTTCCAGTGATCCTCAAGTACCCGTTGAGCCGGTACTCCAA
CATGCCCAAGCTGCAGACTTATGCCGCCGTGTTCTGCAGCGCCAGATGTC
TCGCGAACAGCTGGCCCAGTTGCAGTGCGGCCAGATTCTGGAGTACTTGT
CGGTGGAGCGGGAGCTGTCTTCCGAAGTGCAAGCTTTTCTAGAACATCGT
TTGGCGGCCGGCCAGGTATGGTCTATCTATCCTATCTAATCTAATCACAC
TAGCTAGGAATCTGCCTGACTTGCTGAATTCCCATTAAAAGCCGGGGGTA
CGAGCGCTTCTGAACAATTCCATGGATGC
FMO01245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Socs44A-RA | 1840 | CG2160-RA | 131..1151 | 9..1023 | 4940 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8127705..8128261 | 9..565 | 2785 | 100 | Plus |
| 2R | 25286936 | 2R | 8128324..8128780 | 566..1017 | 2025 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:17 has no hits.
FMO01245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:38 Download gff for
FMO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2160-RA | 66..1100 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:01 Download gff for
FMO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1156 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:11 Download gff for
FMO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1156 | 1..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:11 Download gff for
FMO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8127696..8128261 | 1..565 | 99 | -> | Plus |
| 2R | 8128324..8128780 | 566..1017 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:01 Download gff for
FMO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4015201..4015766 | 1..565 | 99 | -> | Plus |
| arm_2R | 4015829..4016285 | 566..1017 | 98 | == | Plus |
