Clone FMO01247 Report

Search the DGRC for FMO01247

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:47
Vector:pMK33-CFH-BD
Associated Gene/TranscriptskpF-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01247.5prime Sequence

554 bp (554 high quality bases) assembled on 2008-03-12

> FMO01247.5prime
ATAAAACGAAGTTATCAGTCGACATGCCAGTCATCAAATTGCAGTCCTCC
GATGGCGAAATTTTCGAGACCGACATCGAGACTGCCAAGTGCTCGAGCAC
CATTAAGACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACTC
TTATCCCGCTGCCCAATGTGAACTCGACGATCCTGAAGAAGGTCCTCATT
TGGGCCAAGCATCATCGCGAGGACATTGCAGAGGAGAACGAAGAGGAAGC
GGCCAAGTCCGTCGCTGTGCAGATCACCCCCTGGGACGCCGAGTTCCTGT
CCATGGATCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCTG
GACATTCCCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGAT
TAAAGGCCGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAACG
ATTTCTCGCCCTCCGAGGAGGATTTGATGACGATGGAGTCGGAAGTCCCG
CAGGAGGACGAGGCGATAGAGTACGGCGAAATTATAGCAAGCTTTCTAGA
CCAT

FMO01247.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
SkpF-RA 695 CG12227-RA 73..586 23..536 2570 100 Plus
SkpB-RA 877 CG8881-RA 530..628 309..407 195 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23458174..23458687 536..23 2570 100 Minus
2R 25286936 2R 12139544..12139642 407..309 195 79.8 Minus
Blast to na_te.dros performed on 2014-11-28 18:44:56 has no hits.

FMO01247.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:33 Download gff for FMO01247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12227-RA 73..592 23..544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:32 Download gff for FMO01247.5prime
Subject Subject Range Query Range Percent Splice Strand
skpF-RA 73..592 23..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:15 Download gff for FMO01247.5prime
Subject Subject Range Query Range Percent Splice Strand
SkpF-RA 73..592 23..544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:15 Download gff for FMO01247.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23458168..23458687 23..544 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:32 Download gff for FMO01247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19345691..19346210 23..544 99   Minus