Clone FMO01248 Report

Search the DGRC for FMO01248

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:48
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12341-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01248.5prime Sequence

425 bp (425 high quality bases) assembled on 2008-03-12

> FMO01248.5prime
ATAAAACAAAGTTATCAGTCGACATGTTCTCGGACGACACCGATGAGTTG
GACACCATCGCCGATGTGATGGGACTCCGGTCACAGGCGCGTCTCAATAC
GTTTCGCGAAATGTGGTACCACGTCTTTCTGTGGGCCCTGTTCTCCTCCA
TATTCATTCACACCTGCGCCGCCGTGGTGGCCTTCTTCACGCTCCGGAAG
CACAAGTTCGGACGATTCTTCTCGATCCTCATCCTTGTCATGGGATTCCT
TTCCCCGGCCTCCAGTGGCATCATCAGCAGTGCAGTCATCGCCTTTGTGC
ATCGTGCCTCCAGTCTGCCCATGTCGCCCATATACGCCATGATCTGGGGC
CTCGGCCAGACCATCGTCTCCGCCTGCCTGGGATTCACCCGGATTCTGGC
CACGCTAGCAAGCTTTCTAGACCAT

FMO01248.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 1100 CG12341-RA 507..891 23..407 1880 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10812366..10812750 407..23 1880 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 20:26:09 has no hits.

FMO01248.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:34 Download gff for FMO01248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 527..917 23..413 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:03 Download gff for FMO01248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 23..413 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:06 Download gff for FMO01248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 23..413 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:06 Download gff for FMO01248.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10812360..10812750 23..413 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:03 Download gff for FMO01248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6699865..6700255 23..413 98   Minus